DreINT0069079 @ danRer10
Intron Retention
Gene
ENSDARG00000012586 | fmnl2a
Description
formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
Coordinates
chr9:4780810-4781748:-
Coord C1 exon
chr9:4781647-4781748
Coord A exon
chr9:4780906-4781646
Coord C2 exon
chr9:4780810-4780905
Length
741 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATA
5' ss Score
5.47
3' ss Seq
TGGGTTTTTCTCTCTATCAGCAA
3' ss Score
7.62
Exon sequences
Seq C1 exon
GATGCCTTTGATGAGGTGGTGAAATTCTTCGGAGAAAACGCGAAAACGACGCCACCATCTGTATTTTTCCCAGTGTTTGTGCGCTTTGTGAAGGCGTACAGG
Seq A exon
GTAATAAGACCAATTACACATCACCTTTCCGTTCAGACAGACTGCTTCACTTCTTTCATTCATTTAAACCAGGGGTGTCCAAAGGTGGTCCTGGAGGGCCGGTGTCCTGCAGATTTTAGCTCCAACTTGCCTCAAGAAACCTGCAAGGAGGGCTGCCTCCGAAACCGCATACTTTTATACTATATAGTACGCTAAAATCAGTATGCGAGCCTAGTAGTATGTCCGAATTCATAGAATTCGAAAATGAGCATGCGAGAAGTACCCGGATGACTTCCTACTTCCGGCGAGATTCTGAAGTGCGCATTCCATGCATGCTACGCCATCCCATAATGCCCCGCGAGAGAATTCATGAATGCAAATGAGGCGATGCAACTGACGCAGGTAGGTCACGTGACCATGACAAAATGGCAGATGTAGTACGTCCGAATTCCATTCATACATTTCACATTCATACTGTATAGAACGTACTTTTCTAACGGCCGAGTAGTACGTTTAAATTCAAATGCAGTACCTACTGAGTAGTAGGCGGTTTTGGACGCAGCCGATGTTTCTAGAAAGCTTAGTAAGAGCTTGATTAGCTAGCCCAGGTGTGTCTGATTGGGGATGAAACTAAACTATGCAAGACACCGGCCCTCGAGGACCGAGTTTGGACATGCCTGATTTACACCATCGCTGCTCTGACCACTTGTGTTGCTGAACTACTCATTGCCAACAACACTGATGGGTTTTTCTCTCTATCAG
Seq C2 exon
CAAGCAGAGGAGGATAATGAACAGAAGAAGAGACACGAGCAGATGATGATGGAAAAGCTGATTGAGCAGGAGGCGATGGAGCAGGAGGATCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012586:ENSDART00000016814:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.934
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(9.0=100)
A:
NA
C2:
PF0218118=FH2=PD(0.1=0.0),PF035358=Paxillin=PU(15.0=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCTTTGATGAGGTGGTGA
R:
CTTCTGATCCTCCTGCTCCATC
Band lengths:
198-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]