RnoINT0061622 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91279719-91280034:+
Coord C1 exon
chr10:91279719-91279820
Coord A exon
chr10:91279821-91279953
Coord C2 exon
chr10:91279954-91280034
Length
133 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAA
5' ss Score
6.82
3' ss Seq
GACCTGCCTTGGGCCCTTAGAAA
3' ss Score
6.66
Exon sequences
Seq C1 exon
GAGGCCTACGAGTCCGTGGTGGAGTACTTTGGAGAAAATCCCAAGACCACATCCCCCTCCATGTTTTTTTCCCTCTTCAGTCGCTTCACCAAGGCCTACAAG
Seq A exon
GTACAAGTATCTGGTGGGTGGGGCACGGGGCTCTGCAGCCTCTCCCCGAGAGAGCAGTAGGGACAGCTCGTGTCCCAGGTAAGACAGGGAAAGAGGAGGGCTGTTTTCACCAAGACCTGCCTTGGGCCCTTAG
Seq C2 exon
AAAGCAGAGCAGGAGGTGGAACAATGGAAGAAGGAAGCAGCCGCGGACACCTCAGGCAGGGAAGAGCCTCCAGCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.741
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(9.0=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTGGTGGAGTACTTTGGA
R:
CTTGGGTGCTGGAGGCTCTTC
Band lengths:
171-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]