GgaINT0143101 @ galGal3
Intron Retention
Gene
ENSGALG00000001055 | E1C646_CHICK
Description
NA
Coordinates
chr27:1159301-1163058:-
Coord C1 exon
chr27:1163019-1163058
Coord A exon
chr27:1159468-1163018
Coord C2 exon
chr27:1159301-1159467
Length
3551 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
3' ss Seq
AGTGTTTTCTTTTTTTCCAGTTT
3' ss Score
8.66
Exon sequences
Seq C1 exon
AGAAAATGGGCTGGACTTTCCATAGGACAAGAGATAGACG
Seq A exon
GTAAGTGAGACAGCAGCACGATGCTGATGTATAAGAAATGAGTTCCATGTTTCTGTGCTGAAGTGAAACTGAATTGGAAAATCCCACACCTGCAACGCCTCTTCAAGTAAAGTGGAACCCCCATTTCTGAGATGAACTGCTCTCGTGTTTGCTGGCTTCCTGCCTGCTAACATTTTCAAAACCACTGGGATATTTTGTTCACGTGTGAGTGTGAACACTGAACATGTGGTCTGTCCTTGTGGCTTTGGAGAACATGATTGTTGTTGTCTGGGTGTCTCACTGTGTTCAATGCTCAGCTCTTGGACTCACCATCTGTAGGAAAGCTGAAATCTATAGCTTCTTGCTATTCCTTCCCTTTTGAACAAGATCTTTCCCTGTTAAACAGTGTGTTTTTACTCAGGGCTATAAGGCCAATTTTGACAAGAGGTGAAGGATTCTGCATTTTGATGAAGGGAAAGAGATGCATGTCGAGTTCTTGCAGACTGAAGGTTTGTGCTCCATTGTTCAAATAAATGGAACCTATTGAGCCATTGCCAGTGTTCAGAGACTGATTTGCATCTCTCAGCTTGTGTGCTCTTTCATTTGCTCCTACTGCCTTTCACCTCTACCTGTGATGCCTGAACAGTTGACATCACTGTTGGATAGAGGTACTGCTCTTGGGTCTTTCTGTAGCTTCTGAAGTATTGCCAAACTTCTGGCAGCAACTGTTGTTATGGGAAGGTCTCTGCTTTCTTTGCAGTACTGATAAAGGTGATGGATCATACCCATTCTTATAACCACTAGGAATTACCTGTGTGCTCACAAGGGCTGCCATCTCATACTTTTCTTTGCTGAGATTGTTGTGATGAAACCCATTCTTTGGCTGGTCACCTTCCCAGCTGCTTTGGTCTCAGAATTCTATAGGGAAGGATCATTGCTTTCAGGAGAAGTCTGAAGTCTTTGTGCATCTTCCTCTGTAGTGACAGGCTGGAGTGGGTTTGTTTGCCTCTATCCACAACAAATTCTTTTTAGTACTAACATTTCTGGAGAATTACTTGCTAATATTTAGCACCATCAGTTGTTAGAGGAGATTTGTGATTGTCCTTGTTCTGGATCCTGCTAAAAACTTAGTGCTTTGAGAATGTGCATTAAAAAAAAAAACACAGTTGAAGTAATTTCATGCAGAGTGACTAAATGTCATATGACTGCCTGCTGAGAATAAAGGATTTGCAAAGCTATTCTACAGATCAGGAGATATATTCATAAAACGTGTGACTCACCAGGGCTCCCTTTTTGTCTTGTTCCCCTGGTAATGTGAAAGCTCTGCTTTGAATGTCAGTCTAAAATGGAGTCCTGCATGTAGTGGTACAGTGATGTTGAGCCCTGTCAGGCTCCTGCGGCTATGGTAAAGGTTTTCCAGGTGAGTGAATCTTGCAACTTTGCCTTTGGGCAGAGGGTGCTTAATGCTGAGTACCTCACTGGCATCTAGCAGGAGTCTCAGGACTTGCCTGGAACCATACTATTACCAAGAGGCTTGGCAGCAAATAGGGGATTGTGTGAGAAATGCATTTCCCTTATTCAATTCCTACTGCTTTACGTTAGCTGTGACTTCTGCATGAGACAAGACTACTTCTCTAGATTCAGTGCAAACCTAGAATCACAGAATAGCTTAGGCTGGAGGGTCTTCAAAGGTCATCCATTTCCAACTTCCTGCTATGAGCTGGATTGCCAGCCACCAGATGAGGCTGCCCTGGGTCCCATCCCAACCTGGCTGTGAATGCTTCCAGAGATGGGGTATCTACAACTTCTCTGGGTAACCTGTTCCATTGCCTCACTACCCTCTGAATAAATAGTTTCTTCCTAACATCTGACCTAAATCTACCGTCTTTTAGTTTAAAGCCATTCTGCCTTGTCCTATCACTATCTGCTGGTGCCAAAAGTTCTGTACCTCCTGTTTGTAAGCTTCATTCAATACTGACAGGCTGCAGTGAGGTCTCCCCAGAGCCTTCTCTTCTCCAAGCTAAACAAGCCCATCTCTCTCAACCTTTCTTCATAGGAGAGGTGCTTCAGCATTTGATCATCTTTACAGTCCTCCTCTGGACCTGCTCCAACAGCTCTGCATTCTTCCTGCACTGGGGTCCCAGGCTTGGACACAGTTCTCCAGTTGGGGCCTCACAAGAGCAGAGGGGGGCAGTCACCTCCTCTCCCTGCTGCCACCCCTCAGTTGATGCAGCCCAGAATACTGTTGGCCTTCTGGGCTGCAGGTATGTGCTGCTGCCTCATGTGCAGCTTTTCATCCACTAGAATCTCCAAGTCTTTCCCTGCAGGGCTGCTCTCAAGCTTTTCTCCAGTCTGTACTCTTATCTGGGATTGCCCTGGTCCAACACCCTGCACTTGGCCTTGTTGAATCTCTTGAGGTTCTCGTGTGCCCAGTTTTTGAGCCTGGATGGAGTGCCTTCCTTCTGTGGTGTCAGCTGCAGCACTCAGCTGGGTGCTGTCTGCAAACTGCTGAGGGTACGCTTGATCCCACTGTGTGTGTCACTGATAAAGGTGTTGGAGAGCACTGGTTCCAGATGGGCCTCTGGAGGGCACCACTGATCACCGCTTCCACTTGGACGAAGCCATAGACAACAGCCCTGTGGCTGTGACCATCCAACCAACTCTTTATCCACTGAATAGTGCAGCCTTCAAGCCCATCTCTCTCCAACTCAGGCATAAGAATGCAGTGTGGGACTGTGCCAAAGGCCGTGTAGAGCCCAGGTAGGTGACGTTGGTTGCCCTTTGTCCACTTGCCATCACAGTACCATAGAAGGCCTCCAGACAGGTCAGGCACGGTCTGCCCTTTGTGAAGCCATGCTGGCTGTCACTTCATAATGTACTTCATTCTGCTTCTGTAGTCTGGTTTGTGAGTTACTTGGGCTGCTTGCTTTGTGAGATCCTGTGTTTCCAATCAACTGTGTTGAGGCAGTAGCCCTGAAGTTGTAATCCATGCTTTTTATTTTCTGTCCTACTTCCAGCAGCAACAGCCCTGAGTTTTGACATGAGATAGTTGAGACCTGTTGTAGTTGATGCTTCATTCTGATCTGTCAAAGCCTGATAAATCACTGTAGGTTTGACTGCAGTAATATAGTTCAACACTGTTACTACCCTCTCTGGAGAAAAGCTATTCGAGCTATTTCAATCTGTTGAAAAAGTGACCTTTGGTAGGTGGTTTTTCAGGCTTAATGTGTTTCCTTTTGGGCTTTCTTAAGTCATCCTCCAAAGCTGCAGACATTGAGGAAGCTATTGTGGTGCTACTGTTCTCCACTGTCCTCTTCCCCTAGGTTTGTGTGGTGTTTTAGAGGATGTTGTTTAAAGGACATTATTAAAGAAATGCAGGATTTTCAGCAGAGGTACACTTGCTCTGTTTCTGGTGCTGTAGTGGAAGAAGGAGCTAAGGGAAATAAAGTTTTCTATTAGAAATAGGGTATTCAGTTTCATATAATATTCAGAATGGAAGAACGTGTGTTGCCAAGCTTACGGCGTATTTAATTGGTTGTGCCTTCTGAAATGAGTGTTTTCTTTTTTTCCAG
Seq C2 exon
TTTCCCTGTACACTTTCGACAAGTCTAAGCAGTGTATTGCCACGATGACGATTGAGATAGACTTTCTGCAGAAGAAGAACATTGACTCCAACCCATACGACACAGACAAGATGGCTGCTGAGTTCATCCAGCAGTTCAACAGCCAGGCCTTCTCTGTAGGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001055:ENSGALT00000040841:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0235913=CDC48_N=FE(15.9=100)
A:
NA
C2:
PF0235913=CDC48_N=PD(7.3=10.7),PF0293312=CDC48_2=PU(33.3=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]