GgaINT0143142 @ galGal4
Intron Retention
Gene
ENSGALG00000003256 | ATP6V0A1
Description
V-type proton ATPase 116 kDa subunit a isoform 1 [Source:RefSeq peptide;Acc:NP_990055]
Coordinates
chr27:4948713-4951358:+
Coord C1 exon
chr27:4948713-4948820
Coord A exon
chr27:4948821-4951240
Coord C2 exon
chr27:4951241-4951358
Length
2420 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TTTCTGTGTTCACTTTGCAGTTT
3' ss Score
9.81
Exon sequences
Seq C1 exon
GGAACACACAACTTCGGTGGGATCCGGGTGGGCAATGGACCAACAGAGGAGGATGCTGAGATCATCCAACACGATCAGTTATCTACCCATTCTGAGGAGGGGGAGGAG
Seq A exon
GTAAGCACCTGACCATCCTCTGTCCCAGGTCAATGCACATGGGAACAGAATGTGCTAGTTTGGCTGTATTTCCAAGTTGTTTAAATAGCAACATTCTCAGTGAAGCGTTTTCATAGCAGTAAAGTCCTGCAGTCTTCTGGTCATTCCCAGGACTTCAAGGCGGGGAAAGTATAATTTGCAGGCAAGGGGAAATTCAGTTCTGTTTGTCTTCATTAGAAGGAACCACCATCTCACAGGCTGTGCAGTGAGGGCTGCAGAGTGCTCCCACATGCAACTTAGGCCCTGACTGAAGTGCAGTGCATTTGTGCTATTTGCTTCTCCAGTGTTAGCCAGAATCCGAGGCCATTTTTCTGCAGTAGTGAGATCCTACTTTTTGTATTCGCTCTGACTGCTGGGGTTACATTGGCTGCTTCGCCTTACTGCTGGTAGAGAAGAAAAAGGAGATGATCTCTTTCAATTTGGGAGTCTTTTGCTTCCATGTAGTGCATGTGATTTGTTACTGCTGTACTGTGTCATGTTTAGGAGGGAACAACTGAATGTGTTCATGATTAATGTTGATTGAGACACCGCACTAAATGTGAACTTATGTTTTCAAGCCTACAGAGGATGAGGTGGTAAGAATACAGCCAGCTTTGCTGCATTCATGTGTATCTGGAACGTTTCCCATTGGTGTAAACCACGCACTGAATTGAGCGTTATGTCATGGCATCTTCTTTTCCAAAAGATCCAGCTATTGACATGCTAAAGGCCATCTTTAATCCTTCATACAGTGTCACACCCACTAACAGACCTTTGATTACTTCATTTATTTAGCTTGTTTGTCTTGCCCCCTGTCTGCAGATCTCTTAGTTTACCCAGAAAGCTGTGAAGCCAGAACTCTGAAACTGAAAAGTTTATGCTTTTAAACTTCTAAAGAAGTCTCATTTGCCTTATGTTGTGTCTTTAGTAATTCTGCATTGCAATAAAACACTTAAAGCTGGTATGCTTCCTCCCCCCTCCGAAACTGACTTCCATTCTTAGGACAATACTGGTCATTGCCAATGAGAAAATACAGCAAATCCAGTCCAGTTTTCATATAGTTCAGCAGCTTAACTAACCTGCATTCTTCTGTAAGAAGAGAGGCTCTGTTCTGAGAAACTGCTCACTCATAAATACTTGAACAATTATGAGTAGTAAGTTGGTTTTAGGAACTCTTGTGCAGAATTTATTGCAGGTGTCAGGCAATCAGGTAACCACATGTGTCACGAAAATACAAAGGCCATGAAAGTAGAGTAGCTTTGCAAGAATGATGTTGTCTTAAATGATGCTGAAAGTGGTTCTGTTCTGTGGAAGGTGGACTGTGGTGTACAGTTCCATGTGGAATTGGTGTTATTTCTGTAATCCTCTGAAAAATGTGTAAAACTGCAAATGCTCCAACAGAGTGATCCTGCTGAGCCTTCAGCCCCCAGCAGAGTGATGGACTCTCTCCAGCAGTTGCATGTGGCTGTGAATTGTCATTGTTGAAATATCTATCACATTCCATTAATTGCACACTGGTGTGCAATGTGTGCTGGGAGGTGGCGCTGCTTGCTGGGGCAGTTTTTACTAAAGAACACTGCAGCTCTCACTCTGCAGAGGAAGAATTACACTTCTGACAATTCGTTTAACTTTGCTGCTTAAAATATTTACTGCCCTGTGTATACTGAGGGCAGAACGAGGACATAAATAGCCTGCTGTGCATGCCTGCAGCCCGAGTCGCTCCATGTCTTTAAAATACCACGTTGACTTGACTTACATATGAGCAGTTTCTGAAGTACAGATTAAATCCAAAGCGTATGGGAATGCTTTCACAAGGTGGCCAATAAGAAACTCTCCTTCATGGCGGACTTTCTTGTGATTTCTTAATTATTACTTCAAAAAACAACCAATGCACAGAGACTTAGAACTGTACAGACAGGACTTCCTCAAAACTGCTTTGTGCATTATTTTGCTTTCAAAGAGGATAAGTCCCTGTTTTGCACACCGGCCTTTTGACCAAGGTGCATACACAGTATTGACTTGGAATACTGTCTCTTTTCTTGTAGAAGTACATGCAATTTACCAGTGAATTCATACGAACACCATCTTGTTGCTGTACAGTCTTTTCCTGGCAAAGTCAATGGCAGAATTCAAAATATTTTGATTTTGTACAGTAGGACATGAAAACAATCATTAAAGCTGCAGCAGCGAACTGCCATCCTACAAAACCTTGTGAGACAAGAGAATTTGGTTTCAATTCATAAAACTGACATGCTAACCCAGGAGAAGACAGTTTCAGTGTCTAAGTTCAAACAGATGTCCTTGGTGATAGCACCAGGTAGTGTGCTTGTTCTCCCCTGTCAGCCAGCCCTTCCTGTCTGCACATCTCGCAGCTTCCTTCATTTTCTGTGTTCACTTTGCAG
Seq C2 exon
TTTGACTTTGCTGACACTGTGGTGTACCAGGCCATCCACACTATTGAGTACTGCCTGGGGTGCATCTCCAACACTGCGTCCTACTTGAGGCTCTGGGCTCTCAGCTTAGCCCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256:ENSGALT00000005154:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]