MmuINT0021483 @ mm10
Intron Retention
Gene
ENSMUSG00000019302 | Atp6v0a1
Description
ATPase, H+ transporting, lysosomal V0 subunit A1 [Source:MGI Symbol;Acc:MGI:103286]
Coordinates
chr11:101049459-101055143:+
Coord C1 exon
chr11:101049459-101049476
Coord A exon
chr11:101049477-101055025
Coord C2 exon
chr11:101055026-101055143
Length
5549 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
GTGGTTTCTTCCCATGCCAGTTT
3' ss Score
7.12
Exon sequences
Seq C1 exon
CCTACCGAGGACGAAGTG
Seq A exon
GTAAGACCCGAGCCTTCATGTCTATCCGGGGCTTCTCTCTTCCCATCCTTGTGCTCACTCTGTCCACCCTACCGCACCCCGGGGCCACACACATGACACTGTGCATCCTGCATCTCACTGGCCATGTCTAACTAGTCTGTGAGCCTGCATCTGAAACAGTTCATCGTCATTAACTGCATCTCGTGTCGGTCACCTCTGTCCTTGTGCTGTTGACTGCTGATCTAATACCTCTGAGACTGGCTTGGAAGGAGCTGCAGGGAATGTCTACACTGGCATTCTTGAAATCATTACCCCCAGGGTTAAAGTTCCAGGGGTCTCCACCTTCCTCTCCTGTGATGTGTTGGTTGCTCTGCCACCGGGGGAAGGGGGTGTAGTGGTTCCCACCCTGCTCCTCTGAGTGCTTGCAAGCAAAGCTTACCCTTTCTCCTGTCTGAGATGCAGCCTCTCCCGCTGCCCCCATCAGCTTGGTGGTACTTCAACTTAGGGCCACAGGACCCTTGCTTGGAGTCAGTCTTAGCTCCACATGACCTGGTTAAGAAGTGAACAGCTTTCCAAATGAGCTTTGCCTCTCAGGTACATGCAGGGAAAATTAATCTACCTGCAGGAAAGGACTTCTATGTTAAGTACATGAAGAATAATAGAACGGGAAGAAAGCTAAATGCTCAGGCCACGTCTAGAGTACCAGGCCTCGTAGCTCAGCAGCAATCCATTTGCCAGCACTCGCATTTTGAGATAGGTTTGAAATGACCTTTCTGCACTGTTTGTCTTTCCCCTAAACTTCTCTCTAACATCCCTGTACCTATAAACCGTTCCCTTCCCTCTCCCGGTCTCTCCACGGGGCAGTGCATGACCATGGGAAAACCTTTGCTGTCCTGTGTCAAAACAGGCAGCTCTTGGTGTCCCTGATGGCTGGAGAGGCCTCCTTGCCTGCCTCAACCACCTTTGCTCCCGGAGCAGGTGTCTGCGCAGAGTTGCTGGCTAAGCTGCCTGGCTGAGGGAGGGAGGGATGAATGGGATCCCGTGTTGCTGAGGAGCCTGGCCCTCTGCCTGTATCACCACCTCCCACGATACTGCTTTCCAAATGGCTACCTGATGTGCCAGTGCCTTCCCCATCGGCAGAATGTTCTAGTCAGCTATCTAGTGCCAGTGCCCTCAGATAGCCATGTCCCTGGGAGTTGGACAGTCAAAAAGATGGGCCCCGGTGGAGTCCTCCCATTCTCCGGTCACCGAACACACAAAGGAAGTTAGTTCTGCTTGGCTTCCGCCAGGGTTATAATTTTGCCTTTTTCCGGCATTGATTCCCCACAGCCAAATTTAGAAAACTGATATTTTTTGTAATGATTTCAAACAAAGGAGTCTTGCAAAGCAGTGCAGTGAACCTCTATAATTCCCCACGATGTAAACACATGTTTATTCCAGGCAGGGCAACTGTGCCCTCACCTTAGGAAGCACAGGTCTAAACCAGACCCAGACTCATTGATATCTGGGAAATCTTTGAAGGCTGTCACCATTCAACAAGGGTCAATGGCCCCTCCCCCACTGTGTCTTCTCACCCACTGTGTCCACCAACTCATCCACGCTCACCCACCATCTGCCAGTCACGTCACGCACCCTCAGTGTGTCAAGCACTGTGTAATGCTATAGAAATGGAGAGATCATCCAGACAAGGTAGGGAGCTGGTCTGCTGACAGACTCCATGGTGGCTGTGTGCCCGGGATGCTTTGGGAGCACAGAAGGGTGCTGATAGGCACTGGGGGGATTGGAAAGGGAGCAGGAACAGATTCCCTTAGGTTCCTCCTGAGCTGAGACTGGCTGAGCAGAAGTGTGCGGAGGCAGGGAGAGAGGAAGAGGGCAGACCCACAGGCTCAGCTCATGCTCAGGAGTGGTCCAGCTTTGCTGGAGCTGATGTGGGAGCTGGGGACTCGTGAGAGGAGGGTTGGCAGAGAGTGACAGAAGTTGTAGCCTCATTTTGGCAACAAGGAGCTCAGAGTAGTGAAGCTGAGGTGTGTGAGCCCTGCTGCTGAAGTCCCGTGGGTAGAGCTATGGAGTACAGGGGGTGGGGGTGGGGCACAACCTGGAGGCAAGGACATCCTGTGGCGTGATATGATTTAGTGAAGGACTGGATAGCTTAAAGTGAATTAAGTCACTCACGTGGAGGAAGAGGGGTGGAAGGGGAGTCCCTGGCTTGGCTATGGGACAGCAGGCATAATCTTGTTGGGACCTGAGGACAGACCTCTGTGTTTCAATCAGTGATATTGAGTCTGGAGGCTTGTGGTACCGCCATTCTGGAGAATGCCGGGTGAGAGCCAGGGCATAGAACAAGCAGGCCAGAGACAGCACGGATGGAGGGCGGGGAGGGGCTGGCTGTCACAGCAGACATGCTTGTGTTGGACGAGTGACGACTCCTTCCAAATGCGGGAATACATTTCTCCCTGAATTCTCATTCCTCCTGAGAAAGAACACTCCCAAGAAGCTGAGAAGGAAGGAAAAGGAAAAGCAAGGGTATTGTGTGGAAGTGAAGGCTTTCCCCTTCTTTCCTTTCCTCCAGGAAGGACATGGAAACAGTGTCTCCTGTAGCCCAGGCTAGCCTAGAACTCACTATGTAGCCAAGGCTGGCCTTGAGCCCTTCACCTTCCTGCATCTACCTTTCAAGTGCTGGAATCACAGGTGCCACAGCCATACCTGGCTCTCCTTCATTTCACTTGTTTCCTTTTATTGAGATACCTTTTTCCCCCCACACACAGTCTACCCTGACTGTGGTTCTCCTTTTTACATGAGAGAAACTTGGGCTGAGTGAGATGAAAACACTGAAACCACCATCCTTTCATTGCGCCCAGGAATAAAGGCCTTGGAGCTCCAGGCTTGCTTCTGCATTCGTTCATGCAGCTGGTATAGGAAAGGGCTCAGCTCCCATTGCTGGACTGAGGTAGCTTGGGGTAACAAGGGCCACTCATTTTCAGAGTAAGAGGCCTGAAAATAGAAAAGTCCCAAAATTCACAGGGTTTGACAGAGATGACTGGACATGAGGCATTTCCCAAGGTAGCTCACTGGAAATGGCGCCTCTTCCTACTGGCCCTACCCTTACAGCTTGCCAGCACAGCCCCTTAATACAGGACAGAGATTATAGCACACACCAGGCACTGACATGAGGCCAGGGGAAGCCAACGGAGCCTCAGGAGCCCGAAGGCTGACAGCGGTGCTGTGCTGCTCTCCGAGAGACAATGCCAGGAAGAAAAGTATGACTTGATCCGTGGTGGACTTCTTGGTAACATACTGAGTTCAGAAACTGCTCCTAAATGTGAGCTTCTTCTACACCCTGAGCTCTCCCAAAGTCAGATTGGACCCAGGCCAGGGCAAGCGTCCCGGCTGAGCTGTACCCTGGCTCCCCACACCCTTGTTTTGTTACAGATTTTTAGGAACATGGTCTTACTGTGCTGTCCAGGCTCTCCTCAGCCTCACAGCCCTCCCACCTCAGCCTCCTGCTCAGTGCTGGGATTAACAGCTCCAGCCACCAAGCCAGCCACACCTACAGTGTTTCCCAACTAGCTCATCATGTGGGAAATCTGTGGACTTTTGGCAAAAATTTCTCCTGGTGATCTTCTCAGAAGTCAGAGAAGGAAGTTGTCTAGCTCGCAGAAGACTGGGAGGAGGAAGTAAGGAGGCTTGCAGAGCTGGGTGTAGCTTCCTACCTGGGCACTCCTGTCTGGCCTTGCCACATTCCCAGCAGAATGTGCACAGAGCTGCGCTGTAGGGTGGGGACCAGCGGGGTCAGGCCACTGGCAGGGCCCCACGATCTCTCAGTTGATATTAATTGTCAGCTTGACAACATCTGGAGTCACCTGTAAGTCTCCGGCCACGCCTCTGAGAGGGTTAGTGCAGTTCAGTTAACTGAGGTGAGACAGTTTAAAAACAGGTTGCACCATTCCTGGGCGTGGCCCTTGCACTGAAGAGAGGGGAAAGCAGGCAGACATGCGTTTGTTCAGTGTCCTCTGCTTCTTGGCTGTGGATGTGATGTCACTAGCTGCTGTAAGCGCCTGTTGCCTTTAGTCCCCAGCATGATGACTGCACTGGGAACTGTGAGCCTAATAGTCCTGTCTCCCTTAAATCGCTTTTGTCAGGGTATTTAATCCCAGCAAGGGGGAAAAAAATAATACAGTGTTTACTGACTCGGTATGCCCCACTGTGGCGATCAGAGCCCACCAGAGAGAGAGAAAATTGTTGAAAGCAGTGTGGCTGGGAGGTGGTGGTGCACCTCTTTAATTCCAGCACTTGGGAAGCAGAGACAAACAGATCTAGATCTCTGTGAGATCAAGGCCAGCCCGGTCTGCATAGTAAACTCCGACACAACCAGGAATACACAGAGAAACCCTGTCTGGAAAAAAAGCAAAAAAATTTTAAAAATTAAAAAAGATACATAGTATGGCAGAGGTGTTGGCTCACACCTTTAGAGGCAAATGGAGCGCCTGAGTTCAAAGCCAGCCTGGTCTACAGGACAGTCGGAGCTACACAAACCATGACTTGAAAAAAAACAAGCAAACCCCTCTCCCAAAAATAAAATATATACAATGTGGACCTGGAGAGAGAGTTCAGTGGTCAAGAGCACTGGCTGCTCTTCCAAAGAACCTTGGTTCAATTCCCAGCACCCACATGAATGCTCACAGTCTTTTAATGCCTATTCCAGAGGCTCTGGTGCCTTCTACTGGCCTCTGCAGGTACTGCATGCACATGGTGCCCAGGCATACATGCAGGGGAAATAAGTCTTTGAAAAAAGACAGAGACAGAGACAGTGTGATGAGCATGGTGACACACACCACTAAAGCCAGCACTCAGGAGTCAGAGGCAGGCAGATCTCTGAGTTCAAGGCCAGCCTGATCCACAAGGTGAGTTCCAGGCTAGCCAGGACTATATAATGAGACCTTGTATGAAAAAAAAAAAAAGATATACATTGGAGCTGAATAGATTGCTGCTCTTCCAGAGGACCTAGGTTCGTTCCCAGCACCAACATGGTGGTCACAACTACCTGTAACTTCTTACACACACACACACAGATAGGCAGCTGGGTGGTGGTGGTGCACACCTTTATTCCCAGTTCAAGGCCAGTCTGGTCTACAGAGTGAGTTTCAGGATAGCCAGGGCCACACAGAGAAACGCTGTCTCTAAAACAAAACCAAAAGCTAGACATTTCCTGATGCAGTGGTCCATGCTGTGAAGCCAGCACAAGGGAGGCCAAGGAGTTAGGGTTTCAAGTTCAAGATCAGCCTGAAACTACATAGTGAAATTCTGTCTTTAAAAAAAAAAAAAAAGATACAGTATAGCATATTGATAGGTATTAGGGTGCCCCAGTTGGAAGCCAGGCCAGGAAGGATTTCTGGGGAAGTCGTTGCTGAAATCACCACTCATAGTCAGCGCCAGTACTCAGCACTCTACCGGTGAGAGGTCAGCTATGAGAAGTGTAATCCCTGCCCTGGCATGGGCTCCGGGGACCACTCAACTCGTGAACACTCCCCTTCTCGCCTGATCATCTCCTCTGTGGTTTCTTCCCATGCCAG
Seq C2 exon
TTTGACTTTGGCGACACCATGGTCCACCAGGCCATCCACACCATTGAGTACTGCTTGGGTTGTATCTCCAACACCGCGTCGTACCTGCGACTCTGGGCCCTCAGCCTGGCCCACGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019302:ENSMUST00000044721:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(0.6=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types