MmuEX0006887 @ mm10
Exon Skipping
Gene
ENSMUSG00000019302 | Atp6v0a1
Description
ATPase, H+ transporting, lysosomal V0 subunit A1 [Source:MGI Symbol;Acc:MGI:103286]
Coordinates
chr11:101048418-101055143:+
Coord C1 exon
chr11:101048418-101048525
Coord A exon
chr11:101049459-101049476
Coord C2 exon
chr11:101055026-101055143
Length
18 bp
Sequences
Splice sites
3' ss Seq
TGTGAATTTGTGTTTTCAAGCCT
3' ss Score
4.76
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCGACAGAGGAGGATGCTGAAATTATTCAGCATGACCAGCTTTCCACCCATTCAGAGGACGCAGAAGAG
Seq A exon
CCTACCGAGGACGAAGTG
Seq C2 exon
TTTGACTTTGGCGACACCATGGTCCACCAGGCCATCCACACCATTGAGTACTGCTTGGGTTGTATCTCCAACACCGCGTCGTACCTGCGACTCTGGGCCCTCAGCCTGGCCCACGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019302-'46-45,'46-42,49-45
Average complexity
S
Mappability confidence:
100%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
PF0149614=V_ATPase_I=FE(0.6=100)
C2:
PF0149614=V_ATPase_I=FE(4.9=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATTCAGAGGACGCAGAAG
R:
TACGACGCGGTGTTGGAGATA
Band lengths:
106-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types