GgaEX0004247 @ galGal3
Exon Skipping
Gene
ENSGALG00000003256 | ATP6V0A1
Description
NA
Coordinates
chr27:4604377-4607022:+
Coord C1 exon
chr27:4604377-4604484
Coord A exon
chr27:4605081-4605095
Coord C2 exon
chr27:4606905-4607022
Length
15 bp
Sequences
Splice sites
3' ss Seq
TGTGAACTTATGTTTTCAAGCCT
3' ss Score
3
5' ss Seq
GAGGTGGTA
5' ss Score
-1.91
Exon sequences
Seq C1 exon
GGAACACACAACTTCGGTGGGATCCGGGTGGGCAATGGACCAACAGAGGAGGATGCTGAGATCATCCAACACGATCAGTTATCTACCCATTCTGAGGAGGGGGAGGAG
Seq A exon
CCTACAGAGGATGAG
Seq C2 exon
TTTGACTTTGCTGACACTGTGGTGTACCAGGCCATCCACACTATTGAGTACTGCCTGGGGTGCATCTCCAACACTGCGTCCTACTTGAGGCTCTGGGCTCTCAGCTTAGCCCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003256-MICROEX1-2/2
Average complexity
MIC_M
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.228 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.5=100)
A:
PF0149614=V_ATPase_I=FE(0.6=100)
C2:
PF0149614=V_ATPase_I=FE(5.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACAGAGGAGGATGCTGA
R:
TAGTGTGGATGGCCTGGTACA
Band lengths:
113-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]