RnoEX0013261 @ rn6
Exon Skipping
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88952670-88959848:+
Coord C1 exon
chr10:88952670-88952777
Coord A exon
chr10:88953711-88953728
Coord C2 exon
chr10:88959731-88959848
Length
18 bp
Sequences
Splice sites
3' ss Seq
TGTGAATTTGTGTTTTCAAGCCT
3' ss Score
4.76
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCGACAGAGGAGGATGCTGAAATTATTCAGCATGACCAGCTCTCCACCCATTCAGAGGACGCAGAAGAG
Seq A exon
CCTACCGAGGACGAAGTG
Seq C2 exon
TTTGACTTTGGCGACACCATGGTCCACCAGGCCATCCACACCATTGAGTACTGCTTGGGCTGCATCTCCAACACTGCGTCCTACCTGCGGCTCTGGGCCCTCAGCCTGGCCCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814_MULTIEX1-3/5=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=0.222 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
PF0149614=V_ATPase_I=FE(0.6=100)
C2:
PF0149614=V_ATPase_I=FE(4.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCATGACCAGCTCTCCA
R:
GCAGCCCAAGCAGTACTCAAT
Band lengths:
107-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]