DreEX0015947 @ danRer10
Exon Skipping
Gene
ENSDARG00000015174 | atp6v0a1b
Description
ATPase, H+ transporting, lysosomal V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
Coordinates
chr24:7574842-7582189:-
Coord C1 exon
chr24:7582082-7582189
Coord A exon
chr24:7577539-7577556
Coord C2 exon
chr24:7574842-7574959
Length
18 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTTTACTTTTCAAGCAT
3' ss Score
7.31
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGCACACAGAAGTTCGGTGGCGTCCGGGTCGGAAATGGGCCTACGGAGGACGAGGCAGAGATCATTGACCATGACCAGCTCTCACAACACTCAGAGGAAGGTGATGAG
Seq A exon
CATTCAGAGGAAGAACCG
Seq C2 exon
TTTAACTTTGGAGACATGGCTGTTCATCAGGCCATTCACACTATAGAGTATTGCCTGGGCTGCATCTCCAACACGGCCTCATACCTGCGACTCTGGGCCCTTAGTTTGGCTCACGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015174_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.667 C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.3=100)
A:
PF0149614=V_ATPase_I=FE(0.6=100)
C2:
PF0149614=V_ATPase_I=FE(4.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGACGAGGCAGAGATCAT
R:
TGAATGGCCTGATGAACAGCC
Band lengths:
102-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]