RnoINT0023452 @ rn6
Intron Retention
Gene
ENSRNOG00000036814 | Atp6v0a1
Description
ATPase H+ transporting V0 subunit a1 [Source:RGD Symbol;Acc:68405]
Coordinates
chr10:88952670-88959848:+
Coord C1 exon
chr10:88952670-88952777
Coord A exon
chr10:88952778-88959730
Coord C2 exon
chr10:88959731-88959848
Length
6953 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GTGGTTTCCTCCCATGCCAGTTT
3' ss Score
6.76
Exon sequences
Seq C1 exon
GGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAACGGACCGACAGAGGAGGATGCTGAAATTATTCAGCATGACCAGCTCTCCACCCATTCAGAGGACGCAGAAGAG
Seq A exon
GTAAGAGCCGGCGGTGCGGGCTTCCTCTCCTTACCTTGGGCAGCTCTAGTCTTGTTTCCTAAGAGGCTTACTCAATCGTCTCCTTGAAAAATAAAACTACTAATGATTGGCCACTGTCAGGCCTGCTTAGGCTGCTGCAGCTTGCCCCGCAGGGCCTGCTCTAATCTATGGCCACAGAGCCAGCTCTGCTCTGCTCTTCTTGAAGTCCTCGGGTCCGTGGTGCACTGCATGTGACCTCAGTTGCTAACTGCTCTCCACTCAGGCAGCGCCTCGCATCTCACTTCTTGTTAACCAGAACCCCGGGAGCCTTCAGGATAGCGTCTTCATCCTCCGACCCCAGAGTCCTCACGCACACTGCCCAGCAGCGGTATTCAGCGATTCTTTTTGAGGCCTGCCCCATCCATGTATTCTTGATCCAGGGGTTTTTGCTTGTTTTTCAAGAGCTTTTAAGTTTTGCTATCTGTCTTCTTTTTAGACTGCGAGTGAATGGAAAGGAACCAGGCCAGAGTAGCCTTTCCTTCTGACCTTACTTCCAGTTTCAGCCTTTGAAAGTCCATTCTCCTTGCCTGAGCATTCGTGGCATAAAGCCTGCAAACTGAACTATTAACTCTCACCTATTCATTGTGAGGAGTCTTTTTTTTTTTTTAAGCAAATAAAATAGCAGCGAGGGACCTAGACTGAGTTTCTTTGTTTAGCCACTCTGACTATAATTTTGTTTTTTATATATGTGGTTATTTTTTTTTAAGCACAAGAGTTGGGGTGCCTTTAAAAACATATCTTAATTCCTTGATTTCCCTTTTATGTGTATGCTAAGGAAGAGTACCTCCAACACATTGTCCCCAGTCTTCCCCCAAATAGTCAGTAATGTGTGCTCATAGCTTGTGGCCTGTGTGTGGCGTAGCTCCCCACTAAGTGTGAATTTGTGTTTTCAAGCCTACCGAGGACGAAGTGGTAAGACCAGAGCCTTCATGTCTATCTGGGGCTTCTCTCTTCCCATCCTTGTGCTCACTCTGTCCTCTGCCCCACTGCACCCTGGGGCCACACATATCACGCCGTGCATCCCGCCTCTCACTGACCCTGTCTAACCAATCTGTGAGCCTGCATTCCGAAACAGTTCATCTCCATAAACTGCATCTCGTGTCGGTCACCTCTGTCCTTGTGTTGTTGACTGCTGATCTAATACTGGAACTGGCTTGGAAGAGCTACAAGTATGCCTAACCTGGCATTCTTGAGGTCACTGCCCCCAGGGTTAAGTCCCAGGGGTCTCCACCTTCCTCTCCTGTGATGTGTTGTTTGCTCTGCCACTGGGGGAAGTGGTCCCCACCCTGCTCCTCTGAGTGCTTGCCAAGCAAAGCTTATCCCTCCTCCTGTCTGAGATGCAGCCTCTCCCACTGCCCCCATCAGCTTGGTGGTACTTCAACGTAGGGCCACAAGACCCTGGGAGTCAGTCCTAGCTCCACAGGACCTGATTGAGAAGCGAACAGCTTTCCAAATGAGCTTTGCCTCTCAGGTACATGCAGGGAACAGAAGTCCCATCTGCACGAAAGGCCTTCTGTGTTAAGTACATGAAGAATAATAGAGCTGAAAGAATGCCAAATGCTCAGGCCATGTCTAGAGTACCGGGCCTTGTAGCTCAGAAGCAATTCATTAACCAACACTCATGTTTTTGAGATAGGTTTTAAATGACCTTTCTGCACTGTTTGCATCTTTCCCCTAAATTTCTCTCTAACACACCTGTACCTAAGAACCTTTCCCTTCCCTCTCTTGGTCTCTCCAAGGGGCAGTGCATGACCATGGGAAAACCTTGGCTGTTCTGTGTCAAAACAGGCAGTGTTTGCTCTCCCTGATGGCTGGGGAGACTCCCTTGCCTGCATCAACAACAACCCTTGCTCCTGGACCGGGCGTCTGTGCAGAATTGCTGGCTAAGCTGCCTGGCATGGCTGAGGGGAGGGGCAAATGGGATTTCGTGTTGCTGAGGAGCCTGGCCCTCTCCCTGTATCACCACCTCCTGCTTTCCAATGTCTACTGATGTACCTTCATCACTGGCAGAATGTTCTAGTCAGCTATCTAGTGCCAGTGTCCCCAGATAGCCATGTCCCTGGCAGTTGGACAGTCAAGAAGATGGGCTCCACTGTAGTCTTCCCATTCTCTGGCCACCGAACACACTAAGTTAGCCTCCCTAGCTTCTGCCCTGGTCATAACTTTGCCTTTTTCCAGCATTGATTTCCCAAATTTAGAAAACTGACATTTTTTGCAATGATATCAAACAAAACAGAGTCTTGAGAAGCAGTGCAGCGAACCTCTGTAATTCCCTACATTGCTTGGATGTAAACACGAGTTTATTCCAGGCAGGGCAACTGTGCCCTCTCGCTAGGAGGCACTCAGTCCAGGTTCAAACCAGACCCAGACAACTTGATATCTGGGAAATCTCTGAAGGCTGTAACCTCTCAACAAGGGTCGGTGGCCCCTCCCCCACTGTGTCTTCTCACCCGCTGCTTTCACCAACTCATCCATGCTCACCCACCCATCTGCCAGTCACGTGACCTCAGTGTGTCAAGCACTGCGTAGTGCTATAGAAACGGAGAGATCGTCCAGACAAGGTAGGAAGGTCTGCTGACAGACTCCACGATGGATATGTGCCTGGGATGCTTTGGGAGTGCAGAAGGGTGCCTGACAGGCCCCGGGGTGATTGGAAAGAGAGCAGGAAGGATTCCCTTAGGTTCCTCCTGGGCCGAGGCTGGCTGAGGAGGAGTGTCTGGAGAGAAGCAGAGGGGCAGACCCACCACCGTCTACAGTATTAAAAAGACGCAAGCCACAGGCTCAGCTCATGCCCAGGAGTGGTTCAGCTGATGTGGGAGCTGGGGACTCCTGAGAGGAGGGGTTGGCAGAGAGTGGCAGAAGTTGTCTCATTTTGGCAACAAGGAGCTCAGAGTAGTGAAGCCCAGGTACACGGGCCCTGCCGCTGAGACCCCGTGGGTAGAGCCGTAGAATCCTTTGGGTGGGAGAGGGGCACAGCCTGAAGGCAAGGACATCCCGTAGTGTGCTGTGATTTAGTAAAGGACTGGGTAGCTTCAAGTGAATTAAGTCACTCACATGAGGGAAGGGGTGGAAGGGAAGGCCCTGCCTGGCTTGGCTGTGGAACAGTGAGCGTAATCTTGGTGGGACCAGAGGACAGACTGCTATATTTCAGTCAGTGACGTTGAGTCTGGAGGCCTGTGGAACACTAGGAGACAGCATAGCTAGCTGAAGATGGGCAGCACAGAGGTGGGGGGTGGGCAGCAGAAGTGGGGATGTTTGCTTGAGAATTATTCCTGGGATTCCCCGTGTGGCTTTGTCAGTCCAACAGAAAAGACTTAGGGGAAGGAATGTCAGAGGACGAAGGCCAAGAGGCATCTCAAAAAGGAGGGTGCAGCTAGGGTCACAGGGTGTCTGTCAGATGGAACCATGGGAAAGTGTCACCATCTCCCTTAGAAAAGCCATTCTGAAGGATAAAGGGTGAGAGCCAGGGTGCAGAACAACCTGGCCAGAGAGAAGCTGGGAGAGAACACAGATGGAGAGCAGAGAGGGACTGGTGTCACTGCAGAGTTGCTGTCTCGGACGAAGGAAGATTCCTTCCACGTGCGGGAATACATTTCTCCCTTAATTCTCGTCCCTCCTGAGAAAACATTCCCAAGAAGGTGAGAAGGAAGGAAAGGAAAAGCCAGGGTATTGCCTGGAAGTGAAGGGTTCCCCTTCTTTCCTTTCCTCCGGGATGGACATGGAGACTATCTTCTATAGCCCAGGATAGCCTAGAATTCACTAGGTAGCCAAGGATAGCCTTGAGCTCTTCACCTTCTGGCATCTGCCTTTCCAGTGCTGGGATCACAGGTGTCCATGACTATACCTGGGTCTCCCTCACACAGTCCACCCTGACAATGGTTCTCTTTTTTTAATGAGAGAAAATAGAACTGAATGAAATGAAAACACTGACATCACCATCCTTTCACTGAGCTCAGGAAAAGGCCAGGTCTCCTTGGAGCTCCAGGCTCCCTTCTGCATTAGTTCATGCAGCCAGTATACGAGAGGGTTCTTTTGCCATTGCTGGGCTGAGGTAGCTCAGGGTAACAAGGGCCACTCCTTTTCAGAGTAAGAGGCCCAAAGACAGAAAAGTCCAGAAATTCACAGGGTTAAACAGCGATGGCTGTGCGTGAGGCATTCCCCAAGGTAGCTTGCTGGAAGTGGCCTCGTCCTACTGGCCCTACCCTTATGGCTTGCCAGCCCCTTCCTTATACAGTATAGAGACTATAGCATCCGACAGGCCTCACCATGAGGGCAGAGGAAGCTTCTGGAGCCTCAGGAGCCGGAAGGCTCGGAAGGCTGATAGCCATACGGTGCTGCTCTCCCAGAGACAACGTCAGAAAGAAAAACATGACTTGATCTGTGGTGGACTTTTTGATTTCTCCACCCGAACCTTCTAGAACCTACTGGGTTCAGAAAACTGCTCCTAAAGTGTACTCTAAAGAACTTCTCCCAGAGCCTGAGCTCCACCCCATCCGTCCTCCTTTTACACAATAAAAAAGTCAGACTGAACCCCAGGCAGTGCAAGGGTCCCCGCTGAACTCACCCTAGCTCCTGAACACTTGTTTGGTTTCATAGTTTTTGGGACATAGTCTTACTATGTTGCCTAGGCTCTCCTCAATCTCACGGTCCTCCCACCTCAGCCTCCTCAGTGCTGGGATTATAACACAAGCCACCAAGCCAGCCACACCTACAGTATTTCCCAACTAGCTCTTTTTTTTTTTTCTTTTTCTTTTTTTTTCTTTTTTTTGCGGAGCTGGGGACCGAACCCAGGGCCTAGCAAGCCCTCTACCACTGAGCTAAATCCCCAACCCCTCCCAACTAGCTCTTTATGTGGGAATTTGTAGACTCTTGGCAAAAATTTCTCCTGGTGAACTTTTCTTTTTTTTTTTTTTTTTTGGTTCCTGGTGAACTTTTCAAAAGTCAGAGAAGGAAGTTGTCTAGCTCTCAGAAGATTGGGAGGAGGAAGCAAGGAGGCTTGCAGAGCTCAGTGTGCAAGTGGCTTCCTACCTGGGAGCTCCCTGTCTGCCCTCGCCATGTTCCAAGCAGTGGATGCACAGAGCTCCACTGTGAGGTGGGGATCAGTGGGGCCAGGCCACTGGCAGGGCTCTGGTCGCTCAGAAGAATGGGTGTGATGGCTAGTGTTAATTGTCAACTTGACAAATCTGGACTCACCTGGGAGACTCCAGCCATGCCTCTGAGAGGGTTATTGCAGTTCAGTTAGCTGAGGTTTGAAGACATGGCTTAAAAACAGGTGGCACCGTTCCCTGGGTGTGGGCCCTGCCCCGAAGGGCATGTGCTCATTCAGTGCACTCTGCTTCTTGGCTGTAGACATGACGTCACCAGCTGCTGCAAGTGCCTGCTGCCTTGAGTCCTCACCACGACAACTGCTCCAAACTGAGCCAGATAACCCTCTCTCCCCTAAGTCACTTTTGTTGGGGTATTTAATCCCAGCAATAGGAGGAGGAGGAGAAAGAAGAGGAGGAGGAAGAGGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATACAGTGGTTTTTGATTCAGTATGCCCCACTGTATGTGGAGATCAGAGCCCACCAGGGAGAGGAAAAAAATTGTTAAAAACAGTGTGGCTGAGTGGTGGTGGCGTACCCCTTTAATTCCAGCACTCTGGAAGCAGAGGCAAGCGGATCTCTGTGAGATCAAGGTCAGCCTGGTCTAAATAGTAAATTCCAGCACAGTCAGAAGTGCACAGAGAAACACTGTCTGGAAAAATAATTTTAAAAAATTAAAAATAAAAAAAAGATAATATAGTATGGTGGAGATGGTGGCTCACCCCTTTAGAGCAAATGGTACTCTGGGTTCAAAGCTAGCCTGGTCTACAGAGTGAGTCTACAGGACAGCCAGAGCTACCCAAACCATGTCTTGAAAAAAACAACTCACCCCCTCCCGGAAAGATCTACAGCGTGGACCTGGAGAGATAGTTCAGTGGTCAAGAGCACTGGCTGCTCTTACTGAGAACCTTGGTTCAATTCCCAGCACCCATGTGGATTCTCTGGTGCCCTCTGCTGGCCTCTGCAGGTACTGCATGCACATGGTACCCAGCCATAATACAGGAAAATAAGTCTTTAAAAAAAGAGATACATGGTGTGATGGGCATGGTGGCATGCACCACTAAAGCCAGCACTCGGGAGTCAGAAGCAGGCAGATCTCTGAGTCTGAGGCCAGCCTGATCCACAAGGTGAGTTAAAGTTCCAGGCCAGCCAGGACAATACAGTGAGACCCGGTATGAAAACAGGTATACTGCTCTTCAGAGGACCTAGGTTCGTCCCTAGCACCAACATGGTGGTTCACAACTACCTTAACTCCATTTCCTAGACTCCAAGGTGCAAATGCACTTATATGCAGGTACAGTCTTATATACACAAAAGAAAAAAAAAAGCCAAGTGGTAGTGGTGTACACCTTTAATCCCAGTTCAAGGCCAGCCCAGTCTACAGAGTGAGTTCCAGGACAACCATGGCTACACAGAGAAACCCTGTCTAAAAAGATAGAGATTTCCTGATGCAGTTAAAGCCAGCACAAGGGAAGCCGAGGAGGTAGGGTTCTAAGTTCAAGATCAGTCTGAAACTACATAATGAAATTCTGTCTTAAAAAAAGAAGACACAGTGTAACATATTGATGGGTATTAGTGTGCCCCAGTTGGAAGCCAGGCCAGGAAGGATTTGTGGGGAAGTCATTGCTGAAGTCATAACTCATAATCAACAGCCCCTCTACAGGTGAGGTGTCAGCTAAGAGAAATGTAATTCCTGCCCTGGCATGGGCTCTAGGGACCTCTCAACTCCTGCACACCGCCCTCCTAGCCTGATCATCATCTCTGTGGTTTCCTCCCATGCCAG
Seq C2 exon
TTTGACTTTGGCGACACCATGGTCCACCAGGCCATCCACACCATTGAGTACTGCTTGGGCTGCATCTCCAACACTGCGTCCTACCTGCGGCTCTGGGCCCTCAGCCTGGCCCATGCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036814:ENSRNOT00000055238:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(4.4=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]