HsaINT0015074 @ hg19
Intron Retention
Gene
ENSG00000033627 | ATP6V0A1
Description
ATPase, H+ transporting, lysosomal V0 subunit a1 [Source:HGNC Symbol;Acc:865]
Coordinates
chr17:40660590-40665996:+
Coord C1 exon
chr17:40660590-40660607
Coord A exon
chr17:40660608-40665878
Coord C2 exon
chr17:40665879-40665996
Length
5271 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
CTGGTTTCCTCCCACGACAGTTT
3' ss Score
6.64
Exon sequences
Seq C1 exon
CCTTCCGAGGACGAAGTG
Seq A exon
GTAAGATGAAAGCTGGCGTTGCCTTCGTGTTTATCCGGGCTTCTCTCTTCCCATCCTTGTGATCACTCTGCTGACCCTGCCACACCCTGGGGCCATACACATGACTCCTGTGCCTCTGCATCTCACTGGCCATTTCAAACCAGTTCGTGAGCCTGTGTTCTAAAAAGCTCATCTCCATTAACTGCATCTCATGTCGGTCACCTCTGTCTTTGTTTCATTGACTTTGCTGATTTAACACCTCTGAGAATGGCTTTGAAAGGAGCTACAAGTAATGTCTTCACTGGCATTCTTGAAGTGACTCCTCTTGGGGGTTAAGTCCCATTGGCCTCTGCCTTCCTCTCCTGTGATGTTGTGGTTGATCTACTCCCAGCCACCGGGAGTAGCCGTTTCCTCCCTGCTCCTCCTAGTGCTTGTGAGCAAACCTTACCCTTCCTCCCTGTCTGAGCCAGCCTCTTCCTGCTGCCCTCCTCAGCTTGATGATGCTTCAACTTAGAAGTGGTGGACCCTTCTCGGGGTCAGCTCTACCTCCATGTGACCCAGGTGAGAGGGAGACAGCTTTCAAAAGGAGGCTTTGCCTTCCAGATGCATCCCAAAGGAAATAATCCATCTGTGTGAAAGGAGTTCATATTATATCAGCCACATAGAGAATAACGGAGACTGGAAAGCAAATTGGCTAACTGTTCAGGCCACATCTCGAGTAGAAGGCCCTCTGGCTCAGCAGTAATTCACTTAGCAACATACACTCTTTAAACTGGGTTTTTAAAACACCTTGCTGCACTGTTTGCATCTTCCCCCAGCACTTCTCTCTAAAATGCCTAGACCCACAAACCATACCCTTCCCTTCCTGACTCTCGGTCCTCTCTAGGAGGGCAGTGGGATGGGAATGGGAAAGCCTTTGCTGTTCTGTGTAAACACAGGTAGGGCCTGCTCTTCCTGAAGCCTAGAGAGGCTCCTTTGCTGGCATCAAAGAGTGTCTGTGTTCCTGGACTGCTCATCTATGCAGTCCCTGGCTGAGCTACCTGGCAGGGATGGGTGGGGCGTGCTCCATGTTAATGAGGAGCCCAACCCTTTCCCTGGCTCACTACCTCCAACAACACTGCCTTTTAAATGTTTTCCTAGCCGAGCACCCACATTGTCAGAATGGTCTGACCAACTATTGTGTACCAGCGTTCTCGTTTGTAGCCATGTCCCAGGAGGTTGGACATCCAACAAGATAGACTCTAATTCAGCCTCCCCAGTCTCTGGCCACCCAGCTCACTCAGGGATTCAGCTACCCTTGGCTACCCAAGTAGTCTAAACATTTTATCTTTATCAGGCACATATACAGTCTGGTTCTCTGTAGCCAAATTTAGATACCCATGACATTTATCTAATGATTTCAAACCAAACAGGTTCCTAAAAAAACATTCAGCCTACTTCTAGAACTTCCCCATTTTGCTTGGCTGTGAAAATGTATTTGTCCCATGCAGGCCCTTGCTCCAGCCCAGTGGAAGCATTAGTACCTCTTCCTAGCGGGAACTCAGTCCAGCTACACACCAGAGCCAGGCCAGTGGTTGTCTGGGAAATCTTCAAAGGCCGTGACCACTCAGCAAGGGTCAGTGGCACCTCTCCCCACTGTCTCCTCACCAGGTGCATTCATCCCATCCATCCATGCATTCACTCACCCTCCGTGTTGTCCAGCACTATGTATAGTGCTGCAGAAACAAGAAGAATATAGTGCTTGCCTTCAAAGACCTCCCAAAGTGGGGAGATAGTCTGGATGACAGGTGCTGTAATAGAAGTGTGCCCCGGATGCTATAGGAGCACAGAAAGAGGGCAACTGATGAACACTGGGGTGAGAGTGGAAGAGGAGACCCTGGAAGACTCCCTAAGGAAGTTGTCTTACTCTGGTCAAGCAGGAGGCCCTGTAGAGGGAGTGGTGCAGACCCACCAGCATATGCAGCTTCACAGGGGCAAAACACCTGTAGGTCCATCACGTGTTGGGGACTAGCAAGTATTCAGCTTGGCTGGAGCAGAGGCAGGAGTGGGGAACTGGGGACAGGTGAGACTAGAGGTTGGCAGAAACCAGCCATAGTAGTTTTTGCCTCATTTGGACAACAAGGAGCCATCCAAGAGAGAGCGGTGAAGCTGATGGTGACACAGCCATGGCGCATTGAAATACCCCCAGTGGCTGTGTTGTAGGGTATATTGGGTTGGGGAGGGACAAGGTCAGGAGGCATAGACTCGACATCATCTGATGTGATTCAGGACAGAATGGCGAGCCTGAAGTGAAGTGTCTGTAGGATAAGTTGGAAAGGAAGGAACCAATATGAGATATTAAAGAAGTGAAAGCTATAGGTCCCAGTGCCTTAATAAAGGTAAGGAGTAAGAGAAGATTCGAGATTGACTCCCAGACTCTCCAGTCTGCTGGACATGGGAGATGGAATAGAAGTTGATCTCGGTGTGGTCAGAGGAGAGCAGTTACTGTGTTGAGCATGGAGAGCCTGTCGTTCCCCAGGAGAAGGAGTACAGCTGGCTGGAAATAGGCAAGGCAGAGATGGAGAGATCCACCTTGGAGTCACTCCTAGGGGCGACCCTTGAAGCCCTGAGTAGCAATCCCACCAGAAAGATGCAAGGGCTGAAGCTGAAACTTCAGAGAGCATCGGCATTTAAGGAAGAACCTTGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCGGATTGCTTGAGCCCAGGAGTTTGAGACCAGCTGGCCAACGTGGTGAAACCCCGTCTCTACTAAAAATACATAAATTAGCTGGGCGGTAGTGGCATGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGAGAGGAGAATCACTTGATTCTCCTGGGAGGCAGAGGTTGTGGTGAGCTGAGATCGTGCCACTGCACTCCTGTCTTGAAAAAAGAAAAAAAAAAGGAAGAACCTCGATGGAGACTAAAAAGAACTGTCCAGAGAGGTAGGAGGAAAACCAAGGGATGGCAGGTATTTCAAAAAGGAGGAAGAGGCTATGGTGACAGACACTGCAGGAGCATGGACAAGGGCACAGAACATCTGTTAGCTTTAACAGCTGGGCCAGGCGCGGGGGCTCACGCCTGTAATCCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAATCCCATCTTTACTAAAAAATTAGCCGGGTGTGGTGGTGCGTGCCTGTAATCCCAGCTACTGAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGCACCACTGCACTCTAGCCTGGGTGACAAGTGAAACTCCGTCTCAAAAAAAAAAGTAACAACTGGGAGGTTAGGGTGACCTTACTAAGTAGAGGCATTTTGTGGAGGAGTGAAGGTGGAAGCCAGGGTGCAGTAGGGTGAGGACTGGCTGGGCAGAGAGGAAACTGAGGCAGAAGATGTGGACAGGGACTCTGCAGCGATTCATGGTTGGTCATGGCCGATTGATACGGGCGTGTGCTGAGTGGCAGACTCATAAGTGCTGAGCTGGATTTCTCACCCAGTCCTTGCTTCTCCTGAGAACACCTGCAGGAAGCTGGGAATGAAGGAGAGAAGGCAAGGGTAAGGCCTGGAAGCGAGGCTTCTCTCCTGTCCTGCAGTTTATTCGGTGGGAGAAACTTGAGGTAGAATAAAAACACTGAAGGGATTGGCTGTAAGGGAGCCCAGTGGTCACTGCCCTCCCAGCCCATAGGAGTAGAGATCAGCACTCCTGGGAGCCATGGACTTCTTCCTCTCAATGCGGGCCCTGGGGCGGCAGCCAGCAGTGGTAGGAAAGAGCTCTTAACCACGGTGTTGGGATTTAGGGAACTCAGGGAACTAGGATTACCCTAGTTTTCAGGGTAAGTAAGGAAGCTTGAAGAGCCTGTTCCGGAAGAAAAGCCCAGAAATAGGCTAGGTGTCGACAGAGGTGAGGGAGAAGCAGACGTTCGCCCAGAGATGGCATGGTGGAGCCAGCCCCCTCCACGCTGGCTGCACCCCTGTGGCCTGGGCTGTTGTGGCTTTACCAGCCAAGCCACTTTCTCCCATCCCCATGTTCTCAGTGATTTCCCAAGGCATTTCTGGTGTCCTTTGGGAGTGGAATCACGTGGGTTTTGAAAGGAACTGCGGTGAAAAATAGACCCTGACCTGAGGGCAGGGGCCGATGGGGAGGCCACTGAGCCCTCAGGAGTGTCTGAAAGCTCAGAAGATTCTGGTCTGGGCTCTGCGGGGGGAAGCCCCATAAGGGAGCGCCTCCTGGTCTTTGGTCAGCTTGACAGAGAGGCCCAGGGAAAGTACCTGGGGCTTCCAGAATATACCAAATTCAGAAGCCCACATTCACCCCTGACTGTGCTTGGAGCAAACCTGAAAGTTCACTCCCAAGAGCTTGTTCCAGCCCATTCCTTTATTCTGGAAATAATTCTTGGTATTGAAAGGAAAACTGGGACAAAGGGAGCTTGAGGAAAACGAAAACAAACAAGAAACTGGAGATATGCTATTTAGTCTTAACCCAAACAGATATGCTGTTTGGCCTTAACCCATGTGGAAATTTGTAAACTTTGTCAGGATTTCCCTGTGCATGGTGGTGAAATCATGTAGGGAAAAAAAAATTCACCGTGTAATCTCTTTAGAAGTCACAAAAGAAAAAGAAGGTTATCTTGCTCCCAAAAGGCTGTAAAAAGAATAAGTAAAGTGGCCATAGAGGCCTAGTCTTCTCAGGACAGTGTCCGGGTTGAGAGTCTGTCTCCTGAAGCGCACTCTGGGGAAAATCCCTTCCTGCCCTCCTGCAGGTCCTTAGGGTCCCAGACCCAGACAGTCACTTTCTCAACAGAGTGCCGTCAACTCAGCACACACTCCTCTCTTGAGCACAGAGCCCCAGAGGGAGAAGAACAAATGTGTTGAAAAGAATCTTATTAAGATGTAGTTAATTAAAATGTAATGTATTGAGGGGAATGGAGGTGTCCCAGGTGAGGGCTAAGTCAGGCAGGATTTTTGGGGAAGGCATTGCCGAAATCACCACCTGAGCTCAACACTGGGTGCTTCTGGCCCCTCCAGAGTTGAGGTGCCATCCATGGGAAGTGCAGTCCCCTGCCCTGGCCCAGGTTCAAAGCGCCAAGTAGCCACAACTCAGAATGCCTGCACGTTCCCCTCCTAGCCTTATATCTTCTCTCTGGTTTCCTCCCACGACAG
Seq C2 exon
TTTGACTTTGGGGACACCATGGTCCACCAGGCCATCCACACCATCGAGTACTGCCTGGGCTGCATCTCCAACACTGCCTCCTACTTGCGGCTCTGGGCCCTCAGCCTCGCTCATGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033627-ATP6V0A1:NM_001130021:19
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0149614=V_ATPase_I=FE(0.6=100)
A:
NA
C2:
PF0149614=V_ATPase_I=FE(21.8=100)
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)