GgaINT0143516 @ galGal3
Intron Retention
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2274067-2276400:+
Coord C1 exon
chr27:2274067-2274138
Coord A exon
chr27:2274139-2276330
Coord C2 exon
chr27:2276331-2276400
Length
2192 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TTTGAAGTATTGTTTAACAGACT
3' ss Score
3.81
Exon sequences
Seq C1 exon
GGTCCATTAAATAGCGAGTCTTCCAACCAGAGCTTATGCAGCGTGGGTTCTCTCAGTGATAAAGAACTGGAG
Seq A exon
GTAAGCAGGCACAAACCCAAACAGTAATCCAGTTTAACTTAAACACGATTGGATTGAAAGTGTAGAAGGAATTTTATGGGAGCGAGTGCAGCCTTTGGACCACACTGTGAAACAGCTCTTCTTGAAGCTTCCCACTGCAACAGACACGTTTTACCCAACCCCCAAAAAACACAGCATTCATAAAACTCAGCTTATGAAATTGTTTTCAGCTGCATTGTGATTTGTTTGTGGGTTTTGGATAAAGTTTTGGCCAAACACAAAGCCGGAGAGCATTACTGGAAAAGTTTGCCTTACCTATCAAAAATGTGGATTTGCAGAAGTCTGTACAAAGCTGAGTGTTCTCATGAACCGCTCTGTAGAATTGTGGGGAGGTGAAAATTGATCCTTTGTCCCCATTTAAACTCGCTGCTTTAGTGTCAGCTGTTTCTAAACACTTACTTAAAGCAGCAATCAAATGAATTGCAGAGTTTGTTTGTTTGTTTGTTTTAAAATCGCATGTTCATATAACAGTGTCTCAAATTAAAGGCCATTTTCTTATGGCTTTAAAGAGCTTTCCACACAATTACCAGGTAAGTTGTGGGCCATATTTCCTTCTATTATGTGGCAGTACTGATACGAGGTGTCTGGTGAAGCTCAGTCTTTCAAGAATGAAGTATCTGTACGAGTACAGCTGAGAGTGAAAGATTGAGCATTAAGTCTTATTTTACTTGATTTTTGATCAGCCTGTGTGGAGCGATTTAAATTGACCAAGCTTACATAATCAAATCTTCCATTCCTGGCTTTTCAGTCTATAAAAGATAATGTTGTGTGTAATTTTGGTTATATAAATGTACTTGAGTGGAAAAACAACTGAAACTGACTCTCATTAATATGCCTAGAATTCCACAGAGGCTGTAATGTGGAGCTTGTGTTGTTACAGTCACTCCAACATGAGTTGCTCTTCGCTCAGCACTGAGGAGGCTTTTTCATTCACTTGTACAGATGCAGGAGCTGGTGCAGCAAATCTCTCGATTGTTACAGAGTTTTTTAGCCTCTCAATTTTACAAAGTGCTTTGCAGTCACAGTGGCCACCTCTGTCTTAACAACCGTTCCATCATCCTACCAAGATAACATGTCAGCAATGGCCTCGTTGGTGATGTGGGGCCGTAGGTGTCCAGCATCCAGTGGGGACGCAGCCAGGTTTGGGTTCTGGCTGTGTCAGCTTTATCCTTTTCATCCTATTAAAGGAAGTAGATTGATTTCTGTGCTTACTGTGAGCAAGTCTTTTGGCAGAGGTCTTAAACAGGGTACTTTGGACTTTGGTTTCCAAAGAGCATGAAGCTTAGGTTTACCACAAACTTTCTGGCCATGTCTTTCCCTCCCCCAGTATTGTTTTGCACACTGTGGTTTTCCTCCTGCCCCTGGGCTACAGTTTTGCAGTGACTGAAGCGATTGCAAAGCCTATAGCTTGGAAATCATTTGGGATCCCTTAGCATAGATGAGAGATTCTTTTTTTAATGACACGGTGATGGAAATGACAAGGTATCTTTCTTTCCAGCAGCCTCGGTGAGCTGCTTCCAGTGCTATGGAGGCATGGTCTCAGCAAGGTTGGCCACATAAGTGGCTCTGGTGACACACAATGCACCATATCAAGGTCCCTTCTGCTCTCACCTTAATGAGAACAGATGCAAAACAAACCGAATCCAGATGAAGTGCTGCACCTGTGGCAGCTTTCTCCTGGCTGCCATCTCAGCGAACTCTGCCTTTGTGCAAGACTGCAGATGTGCACCAATGGATGGCATAGTTTTGACAAGCATGTGCAAACAGCTTCAGGAAGGTGAACTGTCCTGTTCTCAGCCACCCTACGCCCCTTGTGCCAGTTCTGCAGTCAACCTGAAATGGTTTACACAGGTTGTTTTATTTTTTTTATGTGAACTTGTTCTGCTAACTGTGAGGCTGGCATATTGCAACTGAAATGGGGAGGGGAGGAAATAACCTAATTTTTAACCGTGTTCTGTCCATTTTGCAGTGCTTATATCCAAAGGTAGCAGCTCTTTGAGAGTTATTGTTTCTTTAAGTACCAGCTGTAGAAGCAAATGCACCAGAGAAATGAAACGGCCACTGGGGATGTGGAGCAGATTATTGTGTTTTGGCATTTTCTTTAAACTTTGGAGTAACTGCAGAAATGTTAATTTTGAAGTATTGTTTAACAG
Seq C2 exon
ACTCCTGAGAAAAAACAGAATGACCAGCGGAATAGAAAAAGGAAAGCAGAAGCATATGAGACCAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410:ENSGALT00000000559:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]