HsaINT1044312 @ hg38
Intron Retention
Gene
ENSG00000146872 | TLK2
Description
tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
Coordinates
chr17:62520773-62522273:+
Coord C1 exon
chr17:62520773-62520844
Coord A exon
chr17:62520845-62522203
Coord C2 exon
chr17:62522204-62522273
Length
1359 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ACTTATATGGTATTTGACAGACT
3' ss Score
4.91
Exon sequences
Seq C1 exon
GGACCACTTAATAGTGAGTCTTCCAACCAGAGCTTGTGCAGCGTCGGATCCTTGAGTGATAAAGAAGTAGAG
Seq A exon
GTAAGAAGCTATGTTCATGGCAGGACTTTTCATACTTGTACGTTTGGGCCAGGTTTGGTGGCTCAAGGCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATTGCTTGAGGCTGGGAGTTGGAGACCAGCCTGGGCAACATAGTGAGAACTCGTTTCTACAAAAAAACTTAGCAGGGTGTGGTGGTACACACCTGTGGCCCCAGCTACTTGGAGGTCGGAGGATCGTTTGCACCCGGGAGAATGAGGCTGCAGTGAGCTGTGATGGCACCACTGCACTCCATCCTGGGCGACAGAGTGAGACCCCCATCTCACAGAAAAGATAGCACTGCTTAATTAACTCCCTGGGTGCTGTTAGACTCTGTGTAAATTGCTCCCCTTTGAGCTGTGTGCTCTTTGCATACGTACAGTTATGATGTGGCCCTCACGGGTTTTTATTATAATCATGTGTGGATCTTACATGTCTTAAAATTTTTGCATAGTTGCCATCAGTAAAGGATAGAAATTTGCAATATTGTTCCTGTTTAAATGGAAGATAAAATTGATTGACTGATTTTATTTTTACAACTTTTTTCGAGACATGGCCTCGCTCTGTCATGCAGGTCAGAGTGCAGTGGTGCAATCATAGCTCATTGTAACCTGACACTCCTGAACTCAAGCAGTCCTCCTGTCTCAGCCTCCTGAGTAGCTAGGTGCCACCGTGCCTGGCTAATTTTTAAAAATATTTTTAGAGGCGGGGCCTTGCTATGTTGCCCAGGCTGGTCTGGAACCCAAGCCATCCTCCCACCTCAGCCTCCAAAGTGCTGGGATTACAGACATGAGCCACAGTGCCTGGCGAAGACTTTTTGTTCATTTGCTTAACTATTCACAGCCCTCATGCATGAGATTTTTTTTTTTTATTTGGCATATAACCTAGCTGCCTGTAGATGGGTCTAAGTGTAAGTCTGTAGCCACCTACTTTGTACTTTGCAGATCTCTCCTTTTTGGAAAAAAGATTGGATTTAAAGTAGAAGTAGTGTAACAACAGTTTTCTGAGAACTTAACATATGGTGGACATTTGTCCTACATTTGTGCTCTATTAAATATCTTATGAAGGTTTTGTAGCAGCTCTGATTTACAGATGAATAAACTCAAGCTCTGATATTTTAAGCAGTTTGCCAAAAATTGTGTGGATGGTTTGGTTCTAGACCCTAATACTCTTTGTTATACTCAGTTTTAAGAGGAAGACAGTGATTCAGGACTTGTCTGGGCCAGTTATATCTGTTTATATATTCAATATTTTGTGTATACTCGCTGTTTTTCCTAACGTGAAAAATTTACCAAAATGCTAATTGTGACTTATATGGTATTTGACAG
Seq C2 exon
ACTCCCGAGAAAAAGCAGAATGACCAGCGAAATCGGAAAAGAAAAGCTGAACCATATGAAACTAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146872:ENST00000346027:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains