RnoINT0151409 @ rn6
Intron Retention
Gene
ENSRNOG00000006285 | Tlk2
Description
tousled-like kinase 2 [Source:RGD Symbol;Acc:1310907]
Coordinates
chr10:93438715-93439798:+
Coord C1 exon
chr10:93438715-93438786
Coord A exon
chr10:93438787-93439728
Coord C2 exon
chr10:93439729-93439798
Length
942 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ACATGCATGGTATTTAACAGACT
3' ss Score
4.77
Exon sequences
Seq C1 exon
GGGCCACTCAACAGTGAGTCTTCCAACCAGAGTTTGTGCAGTGTGGGGTCCTTGAGTGATAAAGAAGTAGAG
Seq A exon
GTAAGAAGCTGTACTTAAACAACACGTTCTTATTTGTATCCCTTCAGTTTGGATTCAAGGCTAGCAGCACCATGTAATTGCAGGGCACGTTAGTGGAGCCGTGTGTCCAGCTTTGATGTCAGGTTTTATTCATAATCATACATAGGCCTTTTCTTTTTCCTTTTTACATCTTCTGGGGTTTTTTTGGGGGGGTGTTGGGAGCGAGCCTTAGTTTTTTTAATAAAGGTGAGAGATTTGTCGGTGTAGCAAATTAGCTGCTCTTCAATTCTAATACTTTTCAGTACTCTGTAGAGTAGATCACTGGCTGAATTCAGTAGCATTTGAAAGACTTTTTGTCGTTTAGTTTCCATTTTTTCTGCTGGAAGATAGTATTTATTAAGTAGATAACCTACCCACATGGATATAGGTACAAGTCTTAAGTTCAGTTGCTTGCTTTATACTGTGAAGTTTCCTATAAGTTTGGTCAGTTGAACAGACATTCAGGCCTTTCCTTTTAAAGGGTTGGGTTTAAGCACTTTTGAAGTTGTTTGAAAGCCTGCTATTTGAGTTGACATTTGTCCTTCAGAATTACTTTCCTGAGACAGGTCTTATTGCATACTCAGGCAGGACTTGAATTTGAGATCTTGCCACAGTCTCCTACTTATGGGATTACAGGCATGGGCTACCATACTGCCAAAATATCTTATTTAAAGTTTGTTGCAATTCTGAATTACTAATGAGTATATCGAAGGTTTGATATTTTAAATAACTTTCTAAAAGTTATTTAGGTTTGATTAAAGACCCTGTACTTTGCCTGTTTCTCTGTCCTAAAAGCACTGCACTGATTTAAGACTTGTCTGTGCCAGTTATGACTCTTTTATATCCATAATATTTTGTATATACTGATATCCCAATGTGCAAATTTACCAACATTCTAATTGTGACATGCATGGTATTTAACAG
Seq C2 exon
ACTCCTGAGAAAAAGCAGAATGACCAGCGAAATCGGAAAAGAAAAGCTGAACCATATGAAACTAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006285:ENSRNOT00000066484:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]