GgaINT0143524 @ galGal3
Intron Retention
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2290242-2294030:+
Coord C1 exon
chr27:2290242-2290394
Coord A exon
chr27:2290395-2293963
Coord C2 exon
chr27:2293964-2294030
Length
3569 bp
Sequences
Splice sites
5' ss Seq
AACGTACGT
5' ss Score
9.51
3' ss Seq
GATCTGTCTCTTCCATGCAGGTT
3' ss Score
10.77
Exon sequences
Seq C1 exon
GCAACAGGAAAGGATAAATTCCCAGCGGGAAGAAATAGAAAGGCAACGAAAGATGTTAGCAAAACGGAAGCCACCTGCAATGGGACAGACCCCCCCAGCAAGCAATGAGCAGAAGCAGCGCAAGAACAAGACCAACGGAGCAGAAAATGAAAC
Seq A exon
GTACGTTATGTGGCCTTCTTTGTGCCTTGCAAAGCTGCATGCTTTGATTAGAGCACAGAATATCCACTGGGAAATGGAATCTTGCCCTTGCCTCTAGGCTTCACTACACGCACAAATGAATAGTGTGGAATTAGCCTGGCATTCAGAAACATCTGGCTGCAGTTCTAAATAGTTTTCATTGGAGTAAAACATGGATCATTGCTGAGTCTGGAATTTTTGTGAGCTTAATTTCTTTTGAATGCAGTAAGTTTTCAAACTTGATGCAGCAAGAGAGCTGAAAAAAAGAGATGTGCAAAAGAAGTAAAAGACTTCACTCTTAATTTTGGTAACACTGTACAACACTTTGCTTAAAAAAAAAAAGCACTTTCAGGATCTTTTATGTCTGTGTACCTTCTGGTGAGGCTTTTCAAAGAATGGGTTTGGTATACTGAGGAAAAAAGGTGCTATAAAGGCAGTGCATAAGACATTGAACTGTATCTCAAAAGCACTTCTTTCCAGATATTTGAATGAGGGAAATGGAAGCATTATTTAAGTACTGCTCTCTCATCTCACAGGTGACTTTCTCCTCTTTTTCAGGTTGTTGATACTTTGGGAATGCTGGTGCTTTTAGAGAGCAAAGCTTCTCACAGGAGCTCTTAATCATTGCTCTTTCTTCTTTAAACATGTTTGCTACTTAGAAATTGAAGCCAAACCCTGACCAACTTGTTTCTTGTTGGAAATCACATTAAGTAACGTTATTGTAAATAAAACTGACTCCCAGCGTGCTGCTGAGGCACGTGACCTAGTTTTCCTTTCTTCTTTTTCTCCCCGCTCTGGGCAGTCAGTGCTTTCCCATAGCTTCTACAAGTCTACTTTTCAGTCATCATTTTATTGCTGTTGGCTGATATCATAATTCTCAATGACACTTCTCCATCTGCACTATTAAATCTCCTGGTTATGGCCTTACTTCAGAGGTTCTGGAGCCCTTTGTATTCTTGCACTTTGAAAAGCACATATGAAGCAAAAGCTCCCACTCTTTTTTTGCACCTGCACCAAAGATGGCACATGGTTGGGTGAGCTGTGCATTTGAAATGCTCTCTCTTGCTAAAGTGGTACCCCCAGGTAGGATGCTGAGACTGGTCAGGTCTACTGTATGGGAGTGTGCAGTATATGCTTTCTGCAAATACGTAGCTTGAATGGAGATCTTGACCCCTCACTCTGGCCAAGAGGGCTTAAAAACAACTGAATACACTTTTAAAGCTGAGTTTTTAAATGACAGTTGGATTTTGGAGAAGTAAATTGCACATGGTCACCCATCTGAGCAACAACATAATGCTTTCCAATTTGTGTAGTGATGGTTTTACCTAACAGAAGGGTGCAGCTGCATTGAGGCTTATGCTGTTGACATGGCAGTGTGGGTCTTGACGTAGCCTGGCAATCATGATGTGTACCTGCGATATCCAGTGAGCTTCTACCTGTAGTGAGCCTGCTTTGATGTGATCTCCTCTTTATCTGGTTACACTGGTGAGCCTTTTTTTGTTGCCCAGTCTTTTACTTAGAGTTTCTTGCTGGTCTATCATTCCTCACCATTGTATTTTAAGGTATTATCTTTGTGGTTTAGGAGAGTTGTTTGTGGTGTTCTTGATTTAAAAGCTGCTCACCTGTTCACGTGGAGTGTTCTAGCTTATGATGAATACACTGGTTTTGTAAGTCAGCAGCAGCAACTGGCTACTTGCATACAGATGCATTTGTTGGACTGAGCTGATTCATGTACAACATCTTCCTGATGTTGTAGGGAGGTTTTACTTTTTATGGAATTCTTACAGTGGCTTCTATGCAAGTTGAATGTAAATGCTTATGAAACTTGAATGAAGAGTGGTTGGCCAAATCATTTCATTTGATTTCTGTTTCCTCTTAATTTCATAGTTATTGCTGTGCCTTAGAAAGAAGGGGAAGGTTTCCTGATGTAGGTTCAGACATACCCTTCCCTAACATCACACTCCTACAAATAATGAATGAGACATATTGTCATTCACAGATGTTACCTACTGGATTAACCTTGTGGTTTCTTGAACAGCTTGTGCAGCTTCAGAGTCTCAGCTGCACCAGAAGTAGTGCATTTCAGGCTGTGTGTCTGAAACAGGACAGTGTTTGTCTTTGAGCCTCCTTGGTTTTTGTAATGCTTGCTGCAAATATGGCTTTTTGGGGCAATGTTAGTCTGGTACTCGTTACTTCTCTTGCTTGATGAGTAGACTGTTGGTGTTTAGCTCTGTCTTTCACTTGTGGAAAGCTTGTTGCTGCTTTATTCAGTTGTCTTTTTATTCTTTGTACAGCAACACCAACTGAAGACCTGAATATCTAGGAAAGCCTTTTAGATTAGCTAAATCTGATCCAGGTTCAGACTGTTGTATTTTTCTCATGGAGTAGCACACTTTTATATGAAATGAGACATCACATAAACATTTACGATACCAGGTGTTTTTTGTACCTATCTTTAATTTGTAATAAGTACTTCCTTATGGTTGAAATCCTCTCAAAGGGAATGTTGTGAGTTTTGCATTAAATTTACCTGCTTAAAAACTGCTGTAGAAGTTGTTTCAGCTGTGCAGCCCCTCTGCATTGTGAGCAGGGGAGGGAAGTAGTGACATTTCAAGACAAGCATTGAATCAGCTGCACCCAACGTTGTCTCAGTTGGCTGTATGATGACCTGAGGGAGCACAGCCCAGTAGACAGAGGGCTCCATCTCCTTTTGAAACTGAGTGTGATATTGATGCTGTGGAGAACTTCTGTTGACTTTTGTACTAGGTGCTATACAGAGCATAATTGCTGCAACAAAGATCCTCTTGAGGCATGGTTTGGTCTTAATATTAGGTTCAGAAAGGTTATTTTTATGTTCTCACATGTTATCTTGTTTACAGAGTAAACAGGTGCAATTGATGAGGACTTCATAACCTTATGTTCACATGCATGATGCCTTTACCCGTGTTGGCAGCAGTGAGAAAATCAGTACAGTGGTTGGTTTTGTAACTTCACAGATCTCAGTGCATCGTTACATTTCACTAGGGATGGAACCTATCTCTGCTTTAGAGTAAGGCTGAATTTTGCCTCCTGCTTAGAATGGAAACATTGAATGTTATTTACCATCAGTAAAACGGTGATTTCCTTATCCCGCTGTAGCTGCTTGCAGTGTCAGAGATGTGGAAAAGTGAAGTACAATTCCCATGGTTTCCCTGGAACCACCTGAGAGCCTGAAACAGAAGTTCAGAATCCCAGTTCATGGCTCAGTTTGCAACATCTGTGCTGTAGCCACGCTACTTGCCGTAGCCAGGTGTAGTGCTACAGTCCTGGCACTGTCCTAAATAAGTGTTATTAGGGACCTGAATTTGAAATTGATGCATGCTTTATTAAAGTTTAGCTTTTGGTCTCTTACTTGATTGGCGGATTGTGGAGTTAACAAAAGAAAAAACATTGCTGGATGTTGACATACTCTGTGCAGTTGTTGCCTCCATAGGAGAAGGTGTATACTGCAAGTCATGTGCTTTAATACATGCATTGAAATTCAACACCTTGGATCTGTCTCTTCCATGCAG
Seq C2 exon
GTTAACGCTAGCAGAATACCATGAACAGGAAGAAATCTTCAAACTCCGACTGGGTCATCTGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410:ENSGALT00000000559:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=NA C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]