DreINT0163669 @ danRer10
Intron Retention
Gene
ENSDARG00000042467 | tlk1a
Description
tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]
Coordinates
chr9:3621294-3623609:+
Coord C1 exon
chr9:3621294-3621482
Coord A exon
chr9:3621483-3623542
Coord C2 exon
chr9:3623543-3623609
Length
2060 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CTCTTCTGATCTTCCTGCAGACT
3' ss Score
11.06
Exon sequences
Seq C1 exon
ACAGCAGGAATGGATCATTCAGCAGCGTGAAGAGATCGAGAGACAGAGGAAGCTGTTAGCAAAAAGAAAACCGCCGTCAGCCAGCAGCTCGCAGTCGCCCAGCACAAACTCTGAGCCCAAACAACGCAAAACCAAGGCTGTGAACGGCTCCGAGAACGACCCCTTCCTTAAACCCAGCCTCCCACAGCT
Seq A exon
GTGAGTACATGGCATTTGCTGGAAACTGCTGTAAAATCACCAGAATATGCACCCTCTTGATATCCACACTCGAAATGGCTTTCTATGCGTGACAAACATTCACACACTATTTGAAGCAGTTTTCCCAGAAACATACACTATTACTCTAAGGTTTGTGATGTTTCTGGTGATTTTAAAAGGATTATCATAAAAAAGGCTTCCTCCTGTTTTATCGATATATGTATTTTAGTAAATATAAATGGTCGGTCTTTCTCAAAGCATTTATTTAGGGCTTTGCAATATGGCAAAAATTTCATATCATGATAAAAGTACTCTCATATCTTGATAAGGATATATACACTCACCGCCACCTTATTATGTACACCTGTCCAGCTGCTCGTTAACGCAAAATTCTAATCAGCCAATCACATGGCAGCAACTCAGTGCATTAAGGCATGTAGACATGGCCAAGATGATCTCCTGCAGTTTAAACAGAGCATCAGAATGGGGAAGAAAGGTGATTTAAGTCAGTGGTTCTCAAAGTGGGGGTCGGGGGACAATCAAGGGGGGGGTTGCCTGGTGATTTCAAAAAATCTAATTTTTTTTTAAACCATAAGAATTACCATAGGTTATCCATAACCTACTGAAGAGAAAAAAAAATTGTCGTCTGTAGTTACTATATGCTTTATAGTTACTATATAGTTACTATAGTTGCTTATAGTTACTAGTTCTATTGGAAAGTGACCCCTGGGGTAATTACATTATATTAAAGACACAGCAATAGCGTCAGAAGCAGCAGATTGATTTTATAACACCAGGTAAAACTTTCTTGCCCATTTACAGCACTGATATACATTGAAAAAATTAAAACAAGAATAGACTTGTGTCTATTAGTGTGTGTGTGCCATTGCATTTATAACCACTGTATATATAACAACCTGAAAGGAAATTGGGGGTCGCGAGTCACTGGCAATGTCATTTTGGGGGTCGCTGGCTGAAAAGTTTGGGAACCCCTGATTTAAGTGACTTTAAACATGGCATGATCTTGAGTATTTCAGAAACTGCTGATCTACTGGGATTTTCAGGCACAACCATCTCTAGGGTTTACAGAGAATGGTCCGAAAAAGAGAAAATATGCAGTGAGCAGCAGTTCAGCGGGCGCAAATGCCTTGTTGATGTGAGAGGAGAATGGCCAGACTGGTTCCAGCTGATAGAAAGACAACAGTAACTCAAATAAGCACTCGCTACAACCGAGGTCTGCAGAAGAGCATCTCTGAACACACAACACATCCAAACTTGAGGCAGATGGGCTACAGCAGCAGAAGACCACACCGGGTGCCACTCCTGTCAGCTAACCACAGGAAACTGAGGCTACAATTCACACAGGCTCACCAAAACTGGACAATAGAAGATTAGAGAAACGTTTCCTGCCCTGATGAGTCTCCATTTCTGCTGCAACATTCGGAGGGTCGGGTCAGAATTTGGCATCAACAACATTGAAGCATGGATCCGACAACATGTTTACATGTTTAGCATGTGCAGCCGACAAATCTACAGCAACTGTGTGATGCTATCATGTCAATATGGAGCAAAATCTCTGAGGAATATTTCCAGTAGCTTGTTGAATCTATGCCACGAATGACTAAGGCAGTTCTGAAGGCAAAAGGGGGTCCAATCCAGTAATAGTAAGGTGTGCCTAATAAAGTGGCTGGTGAGTTCATATCACAATATAGTACCATTTCTGTAAATTCAATCAGTTATTAGTGTATATATACTAGAAAAGGAAAATATATAATTTTCTTTCTCTCAGAAATGTACTCTATCTTTATATGTTTGTTTTTTAAAATGGGTTAATGTGAATTATTATAAGCCAAAAGTTGTATGGCATTTTTTACCTCGACGGGTAAAAATCAATTCTGACTCCCACATGTGAGTCTATAAGTGAGCGGTGTGTGGAGAAGTTGCATCAGCTCTTTCAGAATAGTGCGATTGTTTGAATCTCTGCCTGTTGGAACATCCTAACCTGCTGCATGAATGAAGGGACGGCTTTTTATATTCCTACTCTTCTGATCTTCCTGCAG
Seq C2 exon
ACTAACATTAGCCGAGTACCACGAGCAGGAGGAGATCTTCAAACTCCGACTCGGACATCTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042467:ENSDART00000123074:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]