MmuINT0160565 @ mm10
Intron Retention
Gene
ENSMUSG00000041997 | Tlk1
Description
tousled-like kinase 1 [Source:MGI Symbol;Acc:MGI:2441683]
Coordinates
chr2:70738421-70742242:-
Coord C1 exon
chr2:70742054-70742242
Coord A exon
chr2:70738488-70742053
Coord C2 exon
chr2:70738421-70738487
Length
3566 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
3' ss Seq
TAAAATTTCACTTTTGACAGGCT
3' ss Score
5.47
Exon sequences
Seq C1 exon
GCAACAAGAATGGGTGAATCAACAAAGGGAAGACATTGAACGGCAAAGAAAACTTCTAGGCAAACGCAAACCTCCCACAGCTAATAATTCTCAGGCACCTGCTACCAATTCTGAAGCCAAGCAAAGAAAGACCAAGGCAGTCAATGGAGCGGAAAACGATCCCTTTGTTAGGCCAAATTTACCACAACT
Seq A exon
GTAAGCTTCTTTTAAAATTTTCACTTACATTGTTAGCAGTGAGCGAGAATGCTAATAATAATGTTATTCATAATTGATATAGCAAAAACAAAAGTACATATAGCCAGGAAATATGTTAACTGAAAAGTTATCTCTGACATAATCTCCAAGCCTGAATGTTTTCAGTGGATTTTGAGTGGGATTTACCCCCTTTCGTATCTGAATCAGTTGCCTATACCACTGCAGTGTTCAAATTAATATTGTTGGCGGTTTATTTTCTGAATGTATAAATGTACTTCACAGGTAGTTTCAGACAGTTGTTTCTTTTTTCTGTTTTGTTTTCTAAATTTTCTATGTCAATTGCTCTTTGTAATTCAAAGAACAAAGATGCTTAGATAATAGTTACATGTTTATAGAAGATTTGGGAAGTTGTACAAAGATTTATGTGAATAAAGATGTAGATACCCTTGGACGTTCTATATAGACACATTTGTGTCTCCTTATTGAGAAAAGGTTCTTTGACCCTCATTCCTGCCATGTCAGGGACTTTTAAAGCAGTGAGCAGGAAGCAGAGCTCTCATACATTACAAACACAGCTCCATTTGTCCCTCTACACACATACTGCCTAGGTCTTGTGTTTTCTGCACTATTATACCCCAGTCTCTGGCATATTATTCATTCATTAGTCTTCCTTTTTCCTTTCTCTCCCCTCGGTTCCATTTTTATCAAATCTTTTGCCGGGGTGATCTTTAATTTCTGGATTCAAGCAGTCCTCCTGTCTCAGGCTTCCAAAAATCTGACACTACATGAACAGACCAACATGGCCACTTCTTCAAATTCTATCTCAGAATCACTTCTTCAAGTCATTTCTAATTTTGTTCTAAATTCAATTAGAATACCCAACTGTTGGTTTAAAAAGCACTAAGGTTCTATATTCAGCAACACAGTGGCTATCTTAAAAGTGCTGGGCTTTAACTCTATACCTAATGACACTAGTCCTTTAACACCTGGTCTTTTAGTTCTTCTCTTGAGACACCTGGTCCTTTAACCCCGCCCCTATTGATACCTGGTCCTTTAACTCTGCCACTGTAGACACCTAGACCTTTAACTCCTCCCCTGTTGATACCTGGTCCTTTAACTCCGCCCTATTGATACCTAGTCCTTTAACTCTGCTTGTACAGATACCTAGTCCTTTAGTTCTACTCTATAAATAACCTAGTTCTTTATTTACCTCTGCCTCTATAGACGCCTAGTCTTTTAACTCTACCTCTATAGATACCCGGACCTTTAATTCTTTAGCAGTATTTTATAGTTCTTCACATAAAAGTCTTTAACCTCTTGATTTAAATTTATTACTTGATTTTTCTCATTTGGCTTCTGTTGAATGCTGTGGAAATGGGAATTGTTTGTTAATCCTCTGTGGCTGTTTGTAGTCTTGTGTTGTCTCATGCCTTAGAGCATTCCAGAATTTATTTAACAGGTTTTTATCCTTGTGCTTTTCTTTAGGATTTTTTTTAACATGTAGAGTTGTATTATCTGTGAAGATACTTTTATTCTTTCTGTACACTTAGGATACGTTTTTCTGCTCTCACTTTCAGTGTAGTTGTGAGAAGTAGTGAAAACAGCACCCTGACCTATCCTGATCATAGGGAGAATTTTTCTTTCACATTAAAAATGTTTTCCTTATAATACTTGTTTGGAGCTTCTGATTAAATATTCAGTAGAAGTTTCCTGAGCTGTAATAATCCAATGAGCTATGCTTTGTGGCCCTCCACAGTCTGATACTGTAACTTGTTCTCTGTCACTTTGAAGTTTTAGGTGTGTTTTCTTACTTGTCAGGTGTCTTTTAAACTGGCTTAAAACCTAGTTTCTGTTGTTTCTGCTATGTAATCCTAATACTCTTCAATTATTATTAAGTGTTTTTAATCCCAGCACCTAGGAGGCAGAGGCCAGTGGTCTCTTAGAGCATCCTGGCTTATTAGGCCTATACAGTGATACCTGGGCTAAACAAACTAAGGATTCTCTCTCACTTGGAAGGCTATCATTGTTTACTTTCAAATTTACATAAACCTACTGATAGTTGTATTTAGGAGCCTATTTAAAGCTCCTAAATAGATAAGCACATATCTGTAATAGGAGCTATCTATTATCTGTTGTTAATACTTTAATAACAGGTATGATTTATATGGAGAGAAATGAGGTATGCGCTCCCATATTTGTGTGCATAAAAGATTTTTATCTTAAGTAACATGACAAATTGATTTGCTTAAGAGGATATATATTTTAATCATCTTAAAGCACATAGTAAAAACAACTGCTACTTAAAGCTGTTTTGTTAGCATTGTCTGCTTAGCTCTGTTATTCTGAGTGAAGAGATCCTGGTTCTTTAACCAGTCTCCTTGATCTAAATACATACATTTCCTTCTCTTTTTAAGATACATTTTTATTTATGTGAATATATGTCACATGTATGCAGGTACTGACAAACGTCAGAATATTGGTGCTGGAGCTGCAGGTAGTGACAGGGTCTAAGCTTTTAGCCCACACTGGTCTAGAACTCCTGATCTCCTTGCTGTGGCTGAGACCCTCATGAGTAAATGGGACTGTGAAGGTTTTGCAGTTATAGGGAGTGTGTTCTCACACCTACTACAAACATCAACCCCACATGTACTGTGCCCAGCTTCAGTAGCTGGCTACAGTTGCTATTTTCAGTATAGCACTGTATTGTGTTACTCTGAGAATAGGGAGACAATCTGAAGGTTTTACTACTTTGCTCTTAAGAGGATTTTAGTGGAATACTACCTAGATTCCTTGGTTTGTTTCTTTTGACTGCCATTGGTTTGGAAGTAATGAACTTAAAGGAAAATAGACTTTATACTGAGTATTGCTGAAGGAACGGAATGGCACCGGGATAGAAGCATTGCTTTATTACAACGTCCCCTCAGAACCACATACATAACTTCAAACAAGGACATGGGTGTGATGGATGAATGCTGGCCTTTCAGAGTTGAGCTACAGCATAAAAATCTTGTTCCACTTTTTCTTTATCAAATACAGGATCTTTTTTTTTCTGCTTTCACATACCAACGATGTTCTAAGGATCTCGCTTGCTATAACCAAGTCAAGGATGCCCTCCCTGCTCTTGCCCCATGGCTAGTAACCAGAGCGAATTAAATAGTCATCATGCTACCTTTCGTTTTTTTCTTCATAGCACATTCTAGTTAAGGTTTTTCCCCTCATTTTTCTACCTCTGCATCCTTACTATCGATTGTAATTTCAAAATAAGAGTGTAAGAAACGGTTCTTCTCTCCATAGGTAAGCTCTTAGTTTCTGACTTCTGTAGCACCACTTGGTACATAGCACCCATTGCATAGTAGTTAGTTAATTACTCCAAGCAGAAATGGTAAAATTGTGCTGAAGAGGATCATAAAGGGGTTTTTCGACCTCTGTATTTTAGGCTTCAAGTTACCAGTATTTTAACTTGTATATTTAGTTGTTTGGGTTTTTTATCATGTTTTGTTGGTCTTTAATTTTAAAAGGTAATAAGCATTAATCTCAATATAGAATTAAAATTTCACTTTTGACAG
Seq C2 exon
GCTGACTCTGGCAGAGTATCATGAACAAGAGGAAATTTTTAAACTTAGACTAGGACATCTCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041997:ENSMUST00000038584:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.703 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types