GgaINT0143693 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NKP0]
Coordinates
chr27:1677266-1677650:+
Coord C1 exon
chr27:1677266-1677441
Coord A exon
chr27:1677442-1677554
Coord C2 exon
chr27:1677555-1677650
Length
113 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGC
5' ss Score
6.06
3' ss Seq
TCTCACCCTGTCCTGTGCAGCTC
3' ss Score
9.96
Exon sequences
Seq C1 exon
GCATGGTGGAGGTCATCCCCAAGCGCTGCGTGCCCATCGCCAAGAAGGAGCTCCTGTACATGGGCACTGTGGGCTGGGCCTGCTGGCTCAGTGGCATGATCTTCATCGACCGCCAAAGGACAGGAGATGCCATCGATGTCATCTCCCAGACGGCCAAGACTATACAGCGTGAAAAC
Seq A exon
GTGAGCAGGAGAAACTGGGTTGGGGGTAGACAGGGTTTAGGGAGGACCACAGGTGTCACGGTGGGGAGGTGGTGCTTGGGGTCCATGCTTGCATCTCACCCTGTCCTGTGCAG
Seq C2 exon
CTCCAAGTGTGGATTTTCCCAGAAGGCACCAGGAACCAGAGCAGATCCATGCTGCCCTTCAAGCGCGGGGCGTTCCACCTGGCTGTGCAGGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000287:ENSGALT00000000376:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0155316=Acyltransferase=FE(45.0=100)
A:
NA
C2:
PF0155316=Acyltransferase=FE(24.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCATCCCCAAGCGCT
R:
CTGCACAGCCAGGTGGAAC
Band lengths:
257-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]