GgaINT0144860 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2381961-2382433:-
Coord C1 exon
chr28:2382258-2382433
Coord A exon
chr28:2382113-2382257
Coord C2 exon
chr28:2381961-2382112
Length
145 bp
Sequences
Splice sites
5' ss Seq
GAATTGGGG
5' ss Score
-10.96
3' ss Seq
GACCCGTCTGTGCTTTGCAGCGG
3' ss Score
8.9
Exon sequences
Seq C1 exon
GGGGATGCGAATGCACTGGGGACGTGTCCTGACCCCTTCTGCTGAGGGCGGAGAGATTGGGCATGAGAGCAGTGGCAGGGATGGGGGGGCATGGGGGGGCTGCGATAGCCACCGTGGCTATAACCCTGCTCTCCTCTCTCCTTACACTGAGCCCAAGGAGCCCGCAGAGGTAGGAA
Seq A exon
TTGGGGGGCTGGGGGGTCCCTCTTGTCCCCGCATGCGGCACCCAGGCGCGGGGCCGTCCCTGCAGCGAACCGTGCCCCCGAACTGGGGCCGAGCCTCTGCTTCTCGCTGCCGGGAGCCGGCTTAGGACCCGTCTGTGCTTTGCAG
Seq C2 exon
CGGAGGAGCCGCAGGAGACGGATCTGCTGCGTGGAGCGGCCGGGGGCAGCCGGTGCGTGCGGGGCTGGGCGCTCACCCGGCAGCAGCTCCGCGCTCTCTTCACCAAACGACTGCTCCATGCCCGGCGCAGCACGCGGGGCTTCTTCGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.186
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGGGCATGAGAGCAGTGG
R:
CATGGAGCAGTCGTTTGGTGA
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]