GgaINT0144869 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2379396-2379754:-
Coord C1 exon
chr28:2379610-2379754
Coord A exon
chr28:2379532-2379609
Coord C2 exon
chr28:2379396-2379531
Length
78 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTTCCCTCACTGCCCCGTAGAAG
3' ss Score
7.68
Exon sequences
Seq C1 exon
GTGGTCCATCACCCCCCTGATGTACCCGGCCTCCTTCCTCTTCAGCATCCCCAGCACCGCCTACGTGGCCCTGACGTGCGTCAACCTCTTCATTGGCATCAATGGCAGCGTGGCCACCTTCGTGCTGGAGCTCTTTGTGGACAAG
Seq A exon
GTGAGCCCCGGGCCCCATCCCTCACATGGGGCTGGCTGGCTCTGCCGGCTCTCCCATCCTTCCCTCACTGCCCCGTAG
Seq C2 exon
AAGCTCAACAACATCAACCGCATCCTGAAGAAGGTCTTCCTCATCTTCCCCCACTTCTGCCTGGGCCGAGGCTTAATTGACATGGTGAAGAACCAGGCGATGGCCGATGCCTTCGAGAGGTTCGGTGAGTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.6=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCCTCTTCAGCATCCCC
R:
TGGGGGAAGATGAGGAAGACC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]