GgaINT0144870 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2825290-2825632:-
Coord C1 exon
chr28:2825509-2825632
Coord A exon
chr28:2825420-2825508
Coord C2 exon
chr28:2825290-2825419
Length
89 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CCTTTCTCCTCCTTTTATAGGAG
3' ss Score
11.66
Exon sequences
Seq C1 exon
AAGCTCAACAACATCAACCGCATCCTGAAGAAGGTCTTCCTCATCTTCCCCCACTTCTGCCTGGGCCGAGGCTTAATTGACATGGTGAAGAACCAGGCGATGGCCGATGCCTTCGAGAGGTTCG
Seq A exon
GTGAGTGCAGAGGTGCAGGGCTGCTCCCCTGCCCAACCCCCCTCCCCTGGCGCCCCCCATCCTGCAGCTCCTTTCTCCTCCTTTTATAG
Seq C2 exon
GAGACAAGCGCTTCGTGTCCCCGCTGTCCTGGGACTTAGCAGGGAAGAACATGTTTGCCATGGCCATCGAGGGCACCATCTTCTTCCTCTTCACCGTACTGCTGCAGTACCGCTTCTTCCTGCGGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(12.8=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(10.3=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCAACAACATCAACCGCA
R:
TCTTCCCTGCTAAGTCCCAGG
Band lengths:
171-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]