GgaINT0144873 @ galGal4
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2824743-2824976:-
Coord C1 exon
chr28:2824914-2824976
Coord A exon
chr28:2824850-2824913
Coord C2 exon
chr28:2824743-2824849
Length
64 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTAAGCCCACTGCTCCACAGTGC
3' ss Score
4.3
Exon sequences
Seq C1 exon
GTGTATCGGTACCGACGTGCTCCAGCAGTGGACCGGCTGTGCCTGGCTGTCCCACCTGGTGAG
Seq A exon
GTGAGTGCTGGGGGCCACGCACTGCGGTGGGGTCAGGGCTGCTGCTAAGCCCACTGCTCCACAG
Seq C2 exon
TGCTTCGGGCTGCTGGGGGTGAACGGTGCAGGGAAGACATCCACCTTCAAGATGCTGACGGGGGACACCGAAGTGACGCTGGGGGAGGCCTGGCTGAAGGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(7.6=52.4)
A:
NA
C2:
PF0000522=ABC_tran=FE(24.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTACCGACGTGCTCC
R:
AGCGTCACTTCGGTGTCCC
Band lengths:
138-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]