GgaINT0145314 @ galGal3
Intron Retention
Gene
ENSGALG00000000406 | F1NRZ0_CHICK
Description
NA
Coordinates
chr28:524138-524687:+
Coord C1 exon
chr28:524138-524195
Coord A exon
chr28:524196-524636
Coord C2 exon
chr28:524637-524687
Length
441 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
GCTGCCTTCTCTTTGCGCAGAAG
3' ss Score
7.76
Exon sequences
Seq C1 exon
CTGGAGATTCACGTTCTATTTCACATCGTTCTTCTCTGGGGTGGCTCTCCTATACGAT
Seq A exon
GTAAGTACATCAACTGGGAAACAATGTGGGGTTCCTCATTCATGGAAAATAAGTTTGATGCTCCTGGGCCGCTCCAAGGAACCCACAGATAATGTGTGGCCATGACTATGGATTTGGACCACAGTGCCAGAGTCAAAGAAGGACAAATTGAGGGACATGGCACAGAACCATTCCCAATCCACATCCAGCAGAACGATCCCCTTCTCCAGACACAGGCCTGGCTATTTCCTTCATCCCAGCTGCAGCTACTGCCTGCTGGGTATCATCACTGCTGGTGGAACATTCACCAGTGACAACTGCCATCCACTTTTGGAAAGGTCAGGGGCAGATTGGCTCTACCACAAGCACTCTGACACCGTATGCTTACTGAAGTGCTTTTTCTTGCTATTGATACACGTTGTTAGGGCTATGGGCTCTTACTGCTGCCTTCTCTTTGCGCAG
Seq C2 exon
AAGCCGTGGGTTTGGGATCACACTGTGTGCTGGCTGAGATATCCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000406:ENSGALT00000000553:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]