RnoINT0034886 @ rn6
Intron Retention
Gene
ENSRNOG00000001072 | Cers4
Description
ceramide synthase 4 [Source:RGD Symbol;Acc:1309303]
Coordinates
chr12:4445926-4446823:-
Coord C1 exon
chr12:4446766-4446823
Coord A exon
chr12:4445977-4446765
Coord C2 exon
chr12:4445926-4445976
Length
789 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GAATCTTTGTTCCTCCATAGGAG
3' ss Score
9.08
Exon sequences
Seq C1 exon
CTGGAGGTTTGTCTTCTATCTGTGTTCCTTCGTGGGTGGCACCTCTATCCTCTACCAT
Seq A exon
GTGAGTAAACCTGAGGGTAGAACTGAAGGGACCTACCCCACAAGCACCCACGGGGTGCTTACTGAAGACCTACTGTGCACCAGGAGCTGGTCACCTGCAGTGAATGAATCTGCTGGGGAGGAGTGGGAGGCAGAGCTGAACCAGGGAGGAAAGAGGAGGGCTGAGCTGTGGGAGGAAGGAGCTCTCCTAGGTTTTGTTTTCATTCTCCATTGCTGTAATGACACAGAAATAGCTCAAGGGAGGAAGGATTCATTTCGTATTTTAGCTCATGCTTCCAGGTATAGTCTGTCACAGCAAGGGAGGTAGTCTGAAGGAGAGTCTACATCCCTGATCAGGAGTAGACAGCAAGGAATGCCTGCATGTGAGTGTTCAGCTCTCTCTTTCATCTAGTCTAAGGCCCACCTCAGGAAATAGTACTAACCACATTCAGGACAGTTCTTTCCATCTTAACCCCACTAAGAAAGTCTCTCATATAGGCACACTCACAGACCAACATAATATAGACAAACCTCCATTGACGGCACCTTTCCAGGTGATTCTTAATTTTGTTGGCAATTAAAACCAACTATCAGAGTTAACACTCAGGAGTTGAAGGCAGATGGATCATGATCTTGAGGGCAATATCAGCTATATAGTGAAAAATATAAAATATAAATATAAAATGTAAAAGCAGGGAAGAGTGGAGTTGGTACCTTGAAGGCTGTGGAGGCTTGTCATGGGGAATCCAGATTCAGGGTAGGAGGCTGACTTTTGCCTTTGGAGAGCTTGAGAATCTTTGTTCCTCCATAG
Seq C2 exon
GAGTCATGGTTGTGGACACCGGCATTGTGCTGGGAGAATTACCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001072:ENSRNOT00000001418:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
A:
NA
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]