GgaINT0145319 @ galGal3
Intron Retention
Gene
ENSGALG00000000406 | F1NRZ0_CHICK
Description
NA
Coordinates
chr28:528422-531586:+
Coord C1 exon
chr28:528422-528578
Coord A exon
chr28:528579-531511
Coord C2 exon
chr28:531512-531586
Length
2933 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
ATCATCTTTCTTTCCTACAGAAA
3' ss Score
11.27
Exon sequences
Seq C1 exon
TCTCTCCCACAGCACATACTATTACTACGTGACAAAATTTGAGATGTTCTTCCTAAGCTGCCTGATAAACGCTTTCCTGATGATCCTGCAGCTGTTGCACATTTTCTGGTCCTATCTCATCCTCCGGATGACCTTCAATGTCATCCTGTATGGTGCG
Seq A exon
GTAAGAAAAATCTTTTTCTCCTCCATGACCACGAGATCCAGCGTGGCTCTGCACACCTGCAGGGGAAGGGTGGGAGAAAAGGGACTGCCCAACCAAACAGCCCAAGAGCTTCAGAAGTGAAGTCACGCGCTGAGGGTTGTATGGGCGTCTTTGATTGTGAAGATGAGAGAAGCAGCTCCCTTCTCGGGTATTTTGTTTGCTGGTGTTATGCCTTCAGCTTACACTGAGCTGCACCTTCATTCAATTAGATTAAGAGAAAAAATAATTTATCTGAAGGATGAAACGGAGCATACTCTTGTCTAGTTTGCATGTGATGGCAAAATGAGGAGAAGGGGCAATGTGTTCAGAGGCACTGCTGCTACTTGGGATGGCTTGAGGAAGGTGGAGGATTCGGTTGTTGGGAACCCCAAGGAGGTCAACAAGTTAAAATCAGAAGTCCTCCACCTGGCGAGGAAGAATCCTCTGCCGGAACACAACAGGGCTGTGGGGCAGAAAAGGGCCTTTGTGATTTGGAGGTGGACACAAACCAAGTGTGGGCTCTGGCAGCAAAGAAAGCCAAGACAGTCCTGGGCTATATGACAAGGAGCATAGCCAGCAAATAGCATGACACCTCATGTGCTGTGTCCAAATTTGGGTCAATCAGTGCAATAGAGGAAAGTGACAATACACAGACATCCAACAGCGCGCCAGCAAGATAGTGAGGGGCTGATGTACACCATCTGTGAGGAGGGGCTGAGGGAAATGGGCTGCGTAGCCTTTAGGAGAAGCTACTAGAAGCCTTCTGGCATCTAGAGGGAGGTTTTTAAGGAGGAGGAGCCAGGTTCTTCTTAGTGATGAACAGCGGGAGGACAAGAAACAATAGACAAAAGCCGAAATGACCGGTTCGATCTACATATAAAGAACAGCTTTTTCATGGTGCAGGCAGTAAAGCAGCAGAAGAGGTTGCTCAGGGAGTGGAGTATGGTCTCCTGGGGTGTACTGCACTGAGCACTGAGGTGATCCTCCTCTCTGCTCTGCCCTGGGGAGGGCACATTTAGAATACTGTGTCCAGTTCTGGGCTCCCCAGTTCAAAACAGACTGGGATCTCCTAGAGGAGTCCAGTAGAGGGCCACAGATGGTAAAGGGCCTGGAGCATCTCCTGTATGAGGAAAGGCTGAGTGACCTGGGTCTGTGCAGCCTGGGGAAAAGAAGACTGAGGGGGGATCTGATCAATGTTTATAAATGTCTGAAGGGAGGTGTGAGGCAAATGGATGAGGTCAGGCTCTTTTCGGTGGTGCACAGCAATAGGACAAGGAGTAACGGCCTAAAATTTGAACACAGAAGTGCCATACAAACATGTGGAAGAACATCTTTACTGTAAGGCTGACAGAGCACAGGAACAGGCTGCCCAGAGAGGTGGTGGAGTCTCCTTCTATGGAGATAGTCAAGACCCATCTGGATGCCAACCTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCTCCTTCTATGGAGAAATAAAAGAAACAACGTGCTACCGGTTTGTGTAACCCTTTGTAGTGAACTGTTTTAGCAGGAAGTTGTACCCTATGAAAAATTGACGGCCCAAAAAACCCTGGCAATGCTGTGGTGCTGAGTGATTCCACGGAGTGGGGCCATGCCCTTCTTCCTGAGAAGTTTGGTCTGACATCACAGCTGACCACGCTTTGAGGAAGAGGTTGGTACACCATCACCAGAAGTCCCTTTCCAATATGACTTACCCTATGCCCCTAAATACAGATACATATATTTATGAGTGTATATATCAACATACAAAATCCAAACTAGACTATGTACTCACAAAGCAATGAGAGAAAAGTTCCTCCTTCACTTTACCTATGCAAGGACTAAGCTCTCTCTTCGTACTTGGCTTCAGAGGCCGGCCCACTCTGTGCCGTTCAGCGCACCCAGCAGTTTATGTAGTCACTGTGTTAATAAAACTTATTTTCAGAAGGTCACTTTACAGGAACATGGCCAGGATCACCCAGAAAGTGCATTCAAACCTTACAGAAACACTTGCTGGTTTCAGCCTTCCATATACAGGGACAATTACCACGTTGGCATTAAGGACCTGAGCTCACCTATAATTTTTATTGTACCTCTCAGGTTATTTCATCAGTGCTCTGAACGAAATCAGGACTATATAACATAGCATGGCAGGGGGTCTGCAGCTCATTTAAATCATCTTTCTTTCCTACAG
Seq C2 exon
AAAAAAAAAGATGCAAGAAGTGACACCGAGGAAAGCGATGGGAGCGAAGCAGAGGATGCAGCAAAGAACGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000406:ENSGALT00000000553:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]