GgaINT0145319 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NRZ0]
Coordinates
chr28:547194-549556:+
Coord C1 exon
chr28:547194-547338
Coord A exon
chr28:547339-549481
Coord C2 exon
chr28:549482-549556
Length
2143 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
ATCATCTTTCTTTCCTACAGAAA
3' ss Score
11.27
Exon sequences
Seq C1 exon
CACATACTATTACTACGTGACAAAATTTGAGATGTTCTTCCTAAGCTGCCTGATAAACGCTTTCCTGATGATCCTGCAGCTGTTGCACATTTTCTGGTCCTATCTCATCCTCCGGATGACCTTCAATGTCATCCTGTATGGTGCG
Seq A exon
GTAAGAAAAATCTTTTTCTCCTCCATGACCACGAGATCCAGCGTGGCTCTGCACACCTGCAGGGGAAGGGTGGGAGAAAAGGGACTGCCCAACCAAACAGCCCAAGAGCTTCAGAAGTGAAGTCACGCGCTGAGGGTTGTATGGGCGTCTTTGATTGTGAAGATGAGAGAAGCAGCTCCCTTCTCGGGTATTTTGTTTGCTGGTGTTATGCCTTCAGCTTACACTGAGCTGCACCTTCATTCAATTAGATTAAGAGAAAAAATAATTTATCTGAAGGATGAAACGGAGCATACTCTTGTCTAGTTTGCATGTGATGGCAAAATGAGGAGAAGGGGCAATGTGTTCAGAGGCACTGCTGCTACTTGGGATGGCTTGAGGAAGGTGGAGGATTCGGTTGTTGGGAACCCCAAGGAGGTCAACAAGTTAAAATCAGAAGTCCTCCACCTGGCGAGGAAGAATCCTCTGCCGGAACACAACAGGGCTGTGGGGCAGAAAAGGGCCTTTGTGATTTGGAGGTGGACACAAACCAAGTGTGGGCTCTGGCAGCAAAGAAAGCCAAGACAGTCCTGGGCTATATGACAAGGAGCATAGCCAGCAAATAGCATGACACCTCATGTGCTGTGTCCAAATTTGGGTCAATCAGTGCAATAGAGGAAAGTGACAATACACAGACATCCAACAGCGCGCCAGCAAGATAGTGAGGGGCTGATGTACACCATCTGTGAGGAGGGGCTGAGGGAAATGGGCTGCGTAGCCTTTAGGAGAAGCTACTAGAAGCCTTCTGGCATCTAGAGGGAGGTTTTTAAGGAGGAGGAGCCAGGTTCTTCTTAGTGATGAACAGCGGGAGGACAAGAAACAATAGACAAAAGCCGAAATGACCGGTTCGATCTACATATAAAGAACAGCTTTTTCATGGTGCAGGCAGTAAAGCAGCAGAAGAGGTTGCTCAGGGAGTGGAGTATGGTCTCCTGGGGTGTACTGCACTGAGCACTGAGGTGATCCTCCTCTCTGCTCTGCCCTGGGGAGGGCACATTTAGAATACTGTGTCCAGTTCTGGGCTCCCCAGTTCAAAACAGACTGGGATCTCCTAGAGGAGTCCAGTAGAGGGCCACAGATGGTAAAGGGCCTGGAGCATCTCCTGTATGAGGAAAGGCTGAGTGACCTGGGTCTGTGCAGCCTGGGGAAAAGAAGACTGAGGGGGGATCTGATCAATGTTTATAAATGTCTGAAGGGAGGTGTGAGGCAAATGGATGAGGTCAGGCTCTTTTCGGTGGTGCACAGCAATAGGACAAGGAGTAACGGCCTAAAATTTGAACACAGAAGTGCCATACAAACATGTGGAAGAACATCTTTACTGTAAGGCTGACAGAGCACAGGAACAGGCTGCCCAGAGAGGTGGTGGAGTCTCCTTCTATGGAGATATTCAAGACCCATCTGGATGCCAACCTGTGCAACCCTTTGTAGGGAACTGCTTTAGCAGGGGGTTGGACCCAATGATCTCTTGATGTCCCTTCCAACCCCTGCGATGCTGTGGTGCTGAGTGATTCCACGGGGTGGTGCAGTGCCCTTCTTCCTGAGAAGTTTGGTCTGACATCACAGCTGACCACGCTTTGAGGAAGAGGTTGGTACACCATCACCAGAAGTCCCTTTCCAATATGACTTACCCTATGCCCCTAAATACAGATACATATATTTATGAGTGTATATATCAACATACAAAATCCAAACTAGACTATGTACTCACAAAGCAATGAGAGAAAAGTTCCTCCTTCACTTTACCTATGCAAGGACTAAGCTCTCTCTTCGTACTTGGCTTCAGAGGCCGGCCCACTCTGTGCCGTTCAGCGCACCCAGCAGTTTATGTAGTCACTGTGTTAATAAAACTTATTTTCAGAAGGTCACTTTACAGGAACATGGCCAGGATCACCCAGAAAGTGCATTCAAACCTTACAGAAACACTTGCTGGTTTCAGCCTTCCATATACAGGGACAATTACCACGTTGGCATTAAGGACCTGAGCTCACCTATAATTTTTATTGTACCTCTCAGGTTATTTCATCAGTGCTCTGAACGAAATCAGGACTATATAACATAGCATGGCAGGGGGTCTGCAGCTCATTTAAATCATCTTTCTTTCCTACAG
Seq C2 exon
AAAAAAAAAGATGCAAGAAGTGACACCGAGGAAAGCGATGGGAGCGAAGCAGAGGATGCAGCAAAGAACGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000406:ENSGALT00000000553:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=PD(20.0=77.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]