GgaINT0145493 @ galGal3
Intron Retention
Gene
ENSGALG00000003742 | CPAMD8
Description
NA
Coordinates
chr28:3772073-3773114:+
Coord C1 exon
chr28:3772073-3772090
Coord A exon
chr28:3772091-3773059
Coord C2 exon
chr28:3773060-3773114
Length
969 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
ATTCCCAAACCTCTGTGCAGGAT
3' ss Score
6.12
Exon sequences
Seq C1 exon
ATTGAAGCTTATGTAGTG
Seq A exon
GTGAGTATCTGCTGATCCTCCAGCATGTGTTCTGTAGAGGTACGAGATTGCCACAGCCCTGAGAGGAACAAGTCTAACTTCCCCAGTCCATGATGGCCATTCCCAACTCTAACCTGCACCATCGTCTGTATTCCTGTGTCTCCAACACATCTTTGTGGTGTTTCTTTTGATTTGTTTCCTTAATCACCAACAAGCATCCTTGTTTTCAACTTCGGTTTCAGAAACTCATGCCCATTTCTCTGCCTGAGAAGAGCTGGCTAGATTCTCTGGGGTTTATAACTGTAACAGTCCCACTCAATTTCTCCCTTCTTTTCAATGCAGACACAATCCTATCCTTCATCTGGCTGGGCTGGTATAGCAGGGTCAATCTCATCTCTGCACCCACACATTATGATAGTGGAAAATAGAAATTCATGGCAAGGAAAGGGTGCTCCTGTCTTCTTCCTTATGAGGTGAATGAGAGGTTCCTTCTGTGTCTAGTCTTTTTTAAGCCATATGTTTTCTTTTGCTGTCAGCAAGTAGAAGAATTCCCTCTCTTCCTTTGTTTGCGTTCTGTCACAGATTTAATGCTGACAAAGACAGCAGGATTAATTTCATCTGGCTTTGTCATCTAAAAATTGTCTTGTTGGTTATACTGCTCCCTCTATAAATTGAAAGAAAGCATCTTCAGAAGCCTGTTCATCCCATCCAGAATAGGTGACTTAAGATAGGTGGAAGATCTGCCCCTTGGCAGTGCCTGCTTTCTGCGCTGGCCATAGAAGCAGTGTCCTTAAATGTGCACTGGATTTTAGACAGCAAACACCCCCAGTAAAATAACTTCAGAAATGTTTGGACAAAAGCTAATTACATACAAGCTGTCAGTGAGGTGTGTGTGTGTTTATGTATGTGTTTTATTTTGCTAACTAAGTTGGATGTATTAATGATGCTCACTTTCACTGTGATGTTTCTCATTCCCAAACCTCTGTGCAG
Seq C2 exon
GATCCTCGGGGGTCTCGTATGATAGAGTGGAACAATTTAAAGCCATTTTGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003742:ENSGALT00000005938:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(5.4=100)
A:
NA
C2:
PF0183514=A2M_N=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]