DreINT0007484 @ danRer10
Intron Retention
Gene
ENSDARG00000056530 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr22:21234362-21235078:+
Coord C1 exon
chr22:21234362-21234379
Coord A exon
chr22:21234380-21235023
Coord C2 exon
chr22:21235024-21235078
Length
644 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTACCACGTTGTTTACCCAGGAC
3' ss Score
7.91
Exon sequences
Seq C1 exon
CTTGAAGCATACATTGTG
Seq A exon
GTAAGTGGAGGCCACGGGGTGGACACTGCACTGATTGGGAAGCATGGCTGAAGTGTTCCTTTCTCAGCAGGGTCCATGTTGCACAGCTATAGAGCTTGACAACTGGCTGCTGGTGTTGGGTTCGACCCTGGAGCAGACACTAGCGGGTGACTGGGGAGATTAAAGAAAGAGAGAGAGAGTCTTCCTGGGGCGTTGCCCCCTACTGCTCTGTGCTTAGCTTCCATCTCTTTCCCACATGGTGCTTGGTCTTTGAAGGCAAATACTATTGCTCAGTTCCAGAAAATCCTTCTGAAAGTTGTGCAGATGGCCAAAGGGGACCAGAAAAAAATGTTTGCTATGTCGATGTTTCATGTTTATGTTAGTTTGGCACTGTCGGCCTCTGGCTCTCGCTGGAGGAAGTGTCAGTCGGGGTGTGTGTAGTTTTGGCTTGATTGACGGGCTCCTGGAGTGTTAGCCCTTTGAGTCAGGGCAAGGTCAGTTTGTTTGAAAAAGCATCACTGGATTTGAAATGTGTTTGCTTAAGCTTGATTCTTTGCTGCCTTTTAACGAGTGTAAAGTGGCCTTCAGATTTAAGCAAAACAAATAAGCAAGAATGTGACTATTTGTACCACAAACTGTTTAAGATTACCACGTTGTTTACCCAG
Seq C2 exon
GACCCCAGAGGATCCCACATAGTCCATTGGAAAGATCTGAAGTCAATTTGTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056530:ENSDART00000134893:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(2.6=100),PF0183514=A2M_N=FE(5.4=100)
A:
NA
C2:
PF077039=A2M_N_2=FE(9.2=100),PF0183514=A2M_N=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]