GgaINT1010303 @ galGal4
Intron Retention
Gene
ENSGALG00000003742 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr28:3981682-3982650:+
Coord C1 exon
chr28:3981682-3982078
Coord A exon
chr28:3982079-3982595
Coord C2 exon
chr28:3982596-3982650
Length
517 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
3' ss Seq
ATTCCCAAACCTCTGTGCAGGAT
3' ss Score
6.12
Exon sequences
Seq C1 exon
GCCCTGAGAGGAACAAGTCTAACTTCCCCAGTCCATGATGGCCATTCCCAACTCTAACCTGCACCATCGTCTGTATTCCTGTGTCTCCAACACATCTTTGTGGTGTTTCTTTTGATTTGTTTCCTTAATCACCAACAAGCATCCTTGTTTTCAACTTCGGTTTCAGAAACTCATGCCCATTTCTCTGCCTGAGAAGAGCTGGCTAGATTCTCTGGGGTTTATAACTGTAACAGTCCCACTCAATTTCTCCCTTCTTTTCAATGCAGACACAATCCTATCCTTCATCTGGCTGGGCTGGTATAGCAGGGTCAATCTCATCTCTGCACCCACACATTATGATAGTGGAAAATAGAAATTCATGGCAAGGAAAGGGTGCTCCTGTCTTCTTCCTTATGAG
Seq A exon
GTGAATGAGAGGTTCCTTCTGTGTCTAGTCTTTTTTAAGCCATATGTTTTCTTTTGCTGTCAGCAAGTAGAAGAATTCCCTCTCTTCCTTTGTTTGCGTTCTGTCACAGATTTAATGCTGACAAAGACAGCAGGATTAATTTCATCTGGCTTTGTCATCTAAAAATTGTCTTGTTGGTTATACTGCTCCCTCTATAAATTGAAAGAAAGCATCTTCAGAAGCCTGTTCATCCCATCCAGAATAGGTGACTTAAGATAGGTGGAAGATCTGCCCCTTGGCAGTGCCTGCTTTCTGCGCTGGCCATAGAAGCAGTGTCCTTAAATGTGCACTGGATTTTAGACAGCAAACACCCCCAGTAAAATAACTTCAGAAATGTTTGGACAAAAGCTAATTACATACAAGCTGTCAGTGAGGTGTGTGTGTGTTTATGTATGTGTTTTATTTTGCTAACTAAGTTGGATGTATTAATGATGCTCACTTTCACTGTGATGTTTCTCATTCCCAAACCTCTGTGCAG
Seq C2 exon
GATCCTCGGGGGTCTCGTATGATAGAGTGGAACAATTTAAAGCCATTTTGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003742:ENSGALT00000005938:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(10.0=46.2)
A:
NA
C2:
PF0183514=A2M_N=FE(30.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCATCGTCTGTATTCCTGT
R:
CATACGAGACCCCCGAGGATC
Band lengths:
358-875
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]