HsaINT1008287 @ hg38
Intron Retention
Gene
ENSG00000160111 | CPAMD8
Description
C3 and PZP like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr19:17008505-17009320:-
Coord C1 exon
chr19:17009303-17009320
Coord A exon
chr19:17008560-17009302
Coord C2 exon
chr19:17008505-17008559
Length
743 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCCCCCTCCACCACCAACAGGAC
3' ss Score
8.3
Exon sequences
Seq C1 exon
CTGGAAGCCTACATCCTG
Seq A exon
GTGAGTGGCCTCTGTCCTTCCTCGGCTTGGACTTGGGGCCCGGGTAGCCCACCTTCTGCAAGATCTGGTCTGTCTTCGCTCACTGTCTGCCTTCTGGGTTGAGCCGCTGTGCCTTACAAGGCTGGGACCTGGCCTCTTCTATCCTGGTCCCTGGGTCCGCCCTGGGATGGGCTGTGTGTGTGTCTGTCCGTTTCCTTTTTTTTTTTGAAATGGAGTCTCGCTCTATCACCCAGGCTGGATTGCAGTGGTGCTGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTTCCTCAGCCTCCCGAGTAGCTGAGACTACAGGCGTATGGCACCACACCCAGCTAATTTTTTTTTGTATCTTTTTTAGTGGAAATGGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCCACCTTGGCCTCCCAAACTGCTGGGATTACAGGTGTGAGCCACCACACCCAGCCACGTCCATTTCTAGGTTTGTACACGGCTCCCTAAATGAGGAGGTAGGCCCAGCCCATCCCCTTCTGCTTTTCAAATCCTTCTCTATCCAGAGCTTTTTTTTTGCCCCGGGGTTAATGATTAATCTTGGGACCTTCGCTGCATGGTTGACATGCCCAAGAGAGAGGACTGGGAAAATCCTTACATTGGGCACATGCTAGGCTAGCCTGAGTTCACTCCGTGTGTCTGTCCCCCTCCACCACCAACAG
Seq C2 exon
GACCCCCGAGGCTCTCGGATGATAGAGTGGAGACACTTAAAGCCGTTCTGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160111:ENST00000443236:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(5.4=100)
A:
NA
C2:
PF0183514=A2M_N=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains