BtaINT0043115 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009331 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr7:6011246-6011739:+
Coord C1 exon
chr7:6011246-6011263
Coord A exon
chr7:6011264-6011684
Coord C2 exon
chr7:6011685-6011739
Length
421 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCGTGTGTGTCATCTTGCAGGAC
3' ss Score
10.69
Exon sequences
Seq C1 exon
CTGGAAGCTTACATCCTG
Seq A exon
GTGAGTGTCCTGCCCCTCTGCAGCTCTGGCTTGGGGACAGCCTGCTCTCTGCAAGACCTGGTCTGTCTTTGTGCACTACTCCCCCTCTGGGTTGATCCCTGCCTGCCCCAGTGCCTCACACGCTGAGACCAGGTCCAGCCCTGTCCCTGACTCAACCTGGGATAAGCTGAGTACATGTCTGCCCATCTCTTTGTCGATTTTCAAGCACCTCCCTAAATGGGGAGTCAGGATGACCTCTTCTGGCCTCTTGTCTTCAGACATGTCCCTTCTATGCCCCGAGCTTCCGTTTGCTCATCACAAATAGCTAATCTTGGGGCCTGTCTTGACACGTGTCCTGTCCTAGAGAGGGGGCTTGGAAGGTCCTCGTGCGTGCCAGGCACACTAGGGCTGTCCTGAGCTTATCGTGTGTGTCATCTTGCAG
Seq C2 exon
GACCCCCGAGGCTCTCGGATGATGGAATGGAGACACTTGGAGCCCCTGTGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009331:ENSBTAT00000047290:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(5.4=100)
A:
NA
C2:
PF0183514=A2M_N=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]