GgaINT1000139 @ galGal4
Intron Retention
Description
NA
Coordinates
chr27:2693724-2694386:+
Coord C1 exon
chr27:2693724-2693816
Coord A exon
chr27:2693817-2694205
Coord C2 exon
chr27:2694206-2694386
Length
389 bp
Sequences
Splice sites
5' ss Seq
GCAGTTGGG
5' ss Score
-11.18
3' ss Seq
GGGGTCTCCTCTTCTTCCAGCCA
3' ss Score
7.24
Exon sequences
Seq C1 exon
CACTCAGCCTCGTCACCGCCAGCGCCAGTGGCACAGAGGTCAGCAAGCAGGCGGCAGAGAGCAGCCAGTCCTATGCAGGTACCCACATCTGCA
Seq A exon
GTTGGGAGGATGGGGCTGAGGGTTGCTTGGGCACAGTGGCCTCACGTTGGGGCAGAGCTAAACAACTCACAGATTTGAGGGCAATCATGCTCCTGGCCAATGGTCTTTGCTGCCTTTTGTCCACAGTAGTGTTTGCTCTGTGCTTCCAATGCCCTGGGGTTTTGCCTCATCTCTGGGGACTTCTTTGGATTTCCCCCCAGGGGACTCATAGGTGTGTTGGGTAGCAGTGTGATGGACTGCCTACGAGCACTTTGGGTGCTAGGGTGATGGACTCTCCCATGTATGTCAGGGTGGTGGCTTTCCATGAGCACACTGGGTGATGGACCCTGGAGCATCGACAGCATGGGGGATGCAAGTCCAAGGTGCTGAGGGGTCTCCTCTTCTTCCAG
Seq C2 exon
CCACCCCCCTGGACATCCCCAATATGTTCACCTTCTGGGAGGATCAAAGGCCAAACCATCACCCGGAGCCCCTACAGCATGTCTCCTTGGTGCACAGCTCACGGGACATCCCCCTGCACAGCGACTACAGACCAGGACAGATTGAGTCCAGGCTGGAGCTCCTGCAGGCCCAGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000505:ENSGALT00000031464:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=NA C2=0.590
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCAGCCTCGTCACCG
R:
CTGAGCTGGGCCTGCAGG
Band lengths:
271-660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]