HsaINT0084361 @ hg38
Intron Retention
Gene
ENSG00000173826 | KCNH6
Description
potassium voltage-gated channel subfamily H member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr17:63543576-63544411:+
Coord C1 exon
chr17:63543576-63543660
Coord A exon
chr17:63543661-63544248
Coord C2 exon
chr17:63544249-63544411
Length
588 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTTCCCTTTCCCTCCTGCAGATG
3' ss Score
14.01
Exon sequences
Seq C1 exon
GCAGCCGGGGGTCTCCACTCATCCCCCCGACAGGCTCCTGGCAGCCAAGACCACCAAGGTTTCTTTCTCAGTGACAACCAGTCAG
Seq A exon
GTGAGCAAAGCCAGCCCCCACCCCCACCAGCCTGTAGCCCCTGCCCAGCCTCCTACCCCTCCCATGTCCTCTCCATCCTGCCTCCCCAGCGCCACCCCACTCCATGAGTGGAGAGGGGCTCCCTCTCTAGACCCAGAGCTGGAGCCTTGGCCCTCCTTCCTCCCCAGTCTCCCAGTCCTGATGGTCTGTGTCCTCAGAGGCAGAGTGAGGGCTCTGTGGTTCAAATGCAACCCCCAGGGGTGTATGGAGACTAGCCAGCCCCCTGAGGTTCCACACCAAGGCATCAGGGGGGCCACTGGGCTGCAGCTCCCTGGGCAGTGAAACCAGTGCTAAAAGTCCTCACCCTGCCAGGGTCTCCCCATGAGCTGGGGCCCCAGTTCCCCTCTAAGGGCTACAGCCTCCTGGGTCCTGGGAGCCAGAACTCCATGGGGGCAGGACCTTGTGCTCCAGGGCACCCAGGTAAGGAGAGCCACTCCTCACACCCTGTGTCCCCAGGGCAGGTAGGGGGTGGGGGACAGGCTCTATTGAGAAGGGTCAGGCCTGTGGAACCAGCTAGGCCCAGCTGAGACTTCCCTTTCCCTCCTGCAG
Seq C2 exon
ATGCAGCCCCTCCCCTGAGCATCTCAGATGCATCTGGCCTCTGGCCTGAGCTACTGCAGGAAATGCCCCCAAGGCACAGCCCCCAAAGCCCTCAGGAAGACCCAGATTGCTGGCCTCTGAAGCTGGGCTCCAGGCTAGAGCAGCTCCAGGCCCAGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173826:ENST00000314672:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.802 A=NA C2=0.741
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCTCCACTCATCCCCC
R:
CTGTTCATCTGGGCCTGGAG
Band lengths:
240-828
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development