RnoINT0077777 @ rn6
Intron Retention
Gene
ENSRNOG00000008078 | Kcnh6
Description
potassium voltage-gated channel subfamily H member 6 [Source:RGD Symbol;Acc:620304]
Coordinates
chr10:94224981-94225793:+
Coord C1 exon
chr10:94224981-94225065
Coord A exon
chr10:94225066-94225636
Coord C2 exon
chr10:94225637-94225793
Length
571 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTCCCCTTCTTTCCTGAAGGTG
3' ss Score
9.99
Exon sequences
Seq C1 exon
GCAGATGGGGGTCTCCAGTCAACACCCCGACAGGCCCCAGGCCACCAAGACCCCCAAGGCTTCTTCCTCAATGACAGTCAGTCAG
Seq A exon
GTGAGTCCAGCCAGCCCCTGCCCAGGGATCTTGCCTACCCTTTAACTCCTTCTAGTGTTCCCACTATTCTGTCTCAGCCACTCAGTGATAAGAAAAGATTCTTCCTTGGGCAAAGAGAGAGAAGCCTTTATCTTTGTCCCTAGTCCTGCTGGCCTGTGTCCAATGAGTCAGAGAGGGAGAGCTTACTGGTCGCTGGGTGCTTTTTTCGGGGGTGGGGACTAGCCGAGTGCCTGAGGTTCTATATCAAGGTAGCAGGATCAGCCTCAGAACTGGCTGGAGGCATGTTTAAAAAAAAAAAAGTAGCAGGAGATCCTTACCCCTGTCCAGGTCTCAGTTCTAGGAACAATGAGATCAGAACTAGACACCCCCACCCTGACCACTCCATAAGCGGAAGCTCCCAGCTCTTCTCCCACGGATAGCCCAGTTGGGTCCTGAAAGCCTGGTAAGAACAGGACCTTGTCCTCAGGGCACCAAGGCAAGGAGAACCACTCCTTATACCGAGTTCCTGAGGCAAGAAGGGGCAGGCCTGTGGAATCAGATGTAGCAAAGATTGTCCCCTTCTTTCCTGAAG
Seq C2 exon
GTGCCGCCCCTTCCTTGAGCATTTCAGACACATCTGCACTTTGGCCTGAATTGCTACAGCAAATGCCCCCAAGTCCCCCAAACCCACGACAGGACCTGGATTGCTGGCCTCGGGAGCTAGGCTTTAAGTTAGAACAGCTCCAAGCCCAGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008078:ENSRNOT00000010816:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=NA C2=0.453
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGGGGTCTCCAGTCAA
R:
GTTCATCTGGGCTTGGAGCTG
Band lengths:
239-810
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]