BtaINT0079604 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016613 | KCNH6
Description
potassium channel, voltage gated eag related subfamily H, member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr19:48509979-48510748:+
Coord C1 exon
chr19:48509979-48510066
Coord A exon
chr19:48510067-48510579
Coord C2 exon
chr19:48510580-48510748
Length
513 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCCTCTCCCCATCCTGCAGGTG
3' ss Score
11.91
Exon sequences
Seq C1 exon
GCAGGCGGTGGTCTCCAGTCATCACCCCAACAGGCTCCAGGCAGTCAAGACCACCAACAGGGCTTCTTCCTCAGTGACAACCAGTCAG
Seq A exon
GTGAGCAAAATCGGCCCCCGCCAGAGTCTGCCCCTCCTGCACCTGAAGGCCCTGCCCAGCCTCCTGGCCTTTGGCAGGTCCTCCCCTGCTTCTCCTAGGAGAGGCCTCCTCAGGCTCAGCATCAGAGGCCCCTGTACCCCTCCTCCCACTGTGTTCTCGGAGGCTGAGTGAGGGCTGCCCGCAGGGGTGGATACCAGCCCGCCCCCGGGGCTGCACATCAAGGTTCTGCGGGCCCCGCTGGGCGGCAGCTCCCTGGACAGTGAGGCCTGGGCTGAACATCCCCACCCGGCCAGCTCCCCCAGGCTGGGGCCCCACCCCTGCTCCCAGGGCTACAGCCTCTGGGTCCCAGAAGCCAGGCCTCTATGGGGGCAGGACACCCAGGGAAGGAGATGCACTCCTCCCACCCCATGTTCCCACAGCAGGTAGGGAATGGGGCCCCGGCTCTGCTCGAGAAGGCCCAACCTCCAGAACCAGCTGGACCTTGGCTCAAGCTTCCCTCTCCCCATCCTGCAG
Seq C2 exon
GTGCAGCCCCTTCCCTGAGCATCTCAGACGCATCTGGCCTCTGGCCTGAGTTGCTGCAGCAAGTGCCCCCCAGGCCAAATCAGAGCCCCCAAAACCCTCAGGGAGACTCAGACTGCTGGCCTCGGGAGCTAGGCTCCAGGCTAGAGCAGCTCCAGGCCCAGATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016613:ENSBTAT00000022102:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.746
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGTGGTCTCCAGTCATC
R:
CTGTTCATCTGGGCCTGGAG
Band lengths:
254-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development