GgaINT1001030 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14146036-14147093:-
Coord C1 exon
chr5:14147002-14147093
Coord A exon
chr5:14146106-14147001
Coord C2 exon
chr5:14146036-14146105
Length
896 bp
Sequences
Splice sites
5' ss Seq
AAAAAAACC
5' ss Score
-13.44
3' ss Seq
TTCCATCTTTTGTCATACAGCAT
3' ss Score
7.39
Exon sequences
Seq C1 exon
GTAAAACATGGAATTCCAAAAAAAAAACCAAACCAAACCAAACAAACAAACAAACAAAAAAACCAAAACAAACAGACAAACAAACAAACAAA
Seq A exon
AAAACCCAGCACCAACAAAGGCTGTTTCCTGCAATATTTCTTATACTTGTGTGAACTCTAGCAAAAGTTTTTTTCAGCTGTGTCATTTATAAAGACCCTCATCTGCATGCTTTCTGTACTGCCTAATATGTTACAAGCTATTCTATCCAATTTTTCTGTTTCTTGGGTACTTATAGCATTCTTTTTTCATCTACCTGATGCAATTGCCTTCTTCAAGAAATTTCTAGTGTCAGACTGATGAAACATTGTGTACATTTACATAAACTCTATAACCATGAGCCTCTTTTTAAAAAAACAGAGCTTCAAATTTCACAATCTTTTCATTCCTGAATCTCTCTCTCACAGTAGTGGCCATTCATATAGTTAACTCTCTTTCTCATAATACATTCCTCTTGAAGCAGAGAGTAACATGCCATTAACTGGGAAAATGCCACGCATGATCAGATTTTATATAATGACCAGTTTCTTCTGGTTTCTCTTCTGTCTATAGAGTTTTTGCAGAATGCCATGATGTAATACCACCAGAACCATTTTACAAAGGATGTGTTTTTGATGGATGTCGCATAACTGATGAATCCATGCAGTGTTCCAGTTTAGAGATATATGCTACAGAGTGTGCTGCAAGAGGTGTCTGCATTGACTGGAGAGGAAAGACAAACAATACCTGCCGTAAGTACTGCAGAACTCAAAAATGTGTGAGTAAACCAGTAGCAGTTAGGATTTTATTGAGTATGTATATCTTGCATCTTACACTTGACTATAGCAATTTACCTACAAAAATACAGAAATGTCCTTACTGTCAGAAACCCCAGATGTAGGCAGTAAAGGCAGAGTCACTTTTGCCACAGAAATATCTACTACCAGTTTTTGATCATTTTCCATCTTTTGTCATACAG
Seq C2 exon
CATACAATTGTCCAGCAAACATGGTATACAAGCCGTGCGGGTCCATTAATCCTGCTACCTGCAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.903 A=NA C2=0.208
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]