HsaINT1023963 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1195876-1196475:+
Coord C1 exon
chr11:1195876-1196054
Coord A exon
chr11:1196055-1196387
Coord C2 exon
chr11:1196388-1196475
Length
333 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
GTGGCTTCCCCTCCCCACAGCAT
3' ss Score
10.14
Exon sequences
Seq C1 exon
GGTCTTTGAGCCGTGCCACACTGTGATCCCCCCACTGCTGTTCTATGAGGGCTGCGTCTTTGACCGGTGCCACATGACGGACCTGGATGTGGTGTGCTCCAGCCTGGAGCTGTACGCGGCACTCTGTGCGTCCCACGACATCTGCATCGATTGGAGAGGCCGGACCGGCCACATGTGCC
Seq A exon
GTGAGTGCCACCACTGTCCTCAGGGTCCCAAGTCGCTTGTGAGGGGCACAGGCACGCCGGACGGACCAACAGGGTGGGCTCGGGCAGTCAGGGGGGGACCTGGAGGAGGAGGGGGCAGCCCCAGGGCAGAGTGCACCCAGTTCCCTGGAGAGAAGGGAGGGCGTCCACGTCTGGGAGCCCGTGGCGGGGCACTGGGGTGTGGGAGGCCGTAGCCAGGCCCAGGCCCACAGGTGGCTGCGGGCAGCTCCGGAGCAGATGTTGGTGCCCAGCGGCCCGCGTTGCTCTGGGTGGGTGCCCTCCCACCCTCTCAGGTGTGGCTTCCCCTCCCCACAG
Seq C2 exon
CATTCACCTGCCCAGCCGACAAGGTGTACCAGCCCTGCGGCCCGAGCAACCCCTCCTACTGCTACGGGAATGACAGCGCCAGCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(82.2=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(43.3=86.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGAGCCGTGCCACACT
R:
GAGGCTGGCGCTGTCATTC
Band lengths:
262-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains