DreINT0099008 @ danRer10
Intron Retention
Gene
ENSDARG00000078994 | muc2.2
Description
mucin 2.2, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120904-1]
Coordinates
chr25:8265496-8265828:+
Coord C1 exon
chr25:8265496-8265662
Coord A exon
chr25:8265663-8265758
Coord C2 exon
chr25:8265759-8265828
Length
96 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
AAGATACATTTCTTCCTCAGATA
3' ss Score
6.59
Exon sequences
Seq C1 exon
GTTTGAAGCGTGCCACTCCCATGTGCCTCCTGAAAACTTCTTTTCAGCCTGTCAATATGACAGCAGTAATAACCCTGCTGAAGTGTGTGCCAGTCTGCAGAGCTACGCAAGCGTCTGTGCAATGTTTGGGGTCTGCATATACTGGAGGAACTACACAAGCCAATGCA
Seq A exon
GTAAGTTCATGAATGGAATAGATTTCATTTAGGTTATATAAAAATCAGTAAAGCAATTTACAAGTAAATATTCTGAAAGATACATTTCTTCCTCAG
Seq C2 exon
ATATTGGTTGTTCAGAAGATAAAGTGTTCTTGCCTTGTGGTTCATTTGAACCGCCAACATGTAGAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078994:ENSDART00000154598:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(81.2=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(35.1=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACCCTGCTGAAGTGTGTGC
R:
ATCTCTACATGTTGGCGGTTCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]