HsaINT0106754 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1098641-1099280:+
Coord C1 exon
chr11:1098641-1098819
Coord A exon
chr11:1098820-1099210
Coord C2 exon
chr11:1099211-1099280
Length
391 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
CCTCTGCCCATGTCCCTCAGTGG
3' ss Score
6.75
Exon sequences
Seq C1 exon
CCTGTTTGCCCAGTGCCACGCACTGGTGCCCCCGCAGCACTACTACGATGCCTGCGTGTTCGACAGCTGCTTCATGCCGGGCTCGAGCCTGGAGTGCGCCAGTCTGCAGGCCTACGCAGCCCTCTGTGCCCAGCAGAACATCTGCCTCGACTGGCGGAACCACACGCATGGGGCCTGCT
Seq A exon
GTAAGTGCCCATCTGCCCCTGCCCTGGAGCTGGGGGCCTGCAGGCCAGACGTGGTCTCTAGGCTCTGCCAGGTGCTGTGCCCAGCCTGAAGCTAGACCTAGATGGGCTGCGGCCAGGGATGCAGAGATGGCGGGTGTGAGACCAGGGCTGGGGCCATGGGGTGGGGAAGGCCAGGCTGGAGGGGCTGAGGTGCTGGGGCTTCTGCCAGCATCGCTAAATGCAACTGGGTGCCCACCACCCAGCTCGGGACAACCTCGAGGGTGGAGGTTGATGCCCAGGCAGCTGGTCACCCTCCTCCGTGTGTGGGGCACTGGGCAGCTGTCACTCAAGGGGGTCCAGGCTCCTCCGCCTGACATGAGGCAGCCCTCTGACCTCTGCCCATGTCCCTCAG
Seq C2 exon
TGGTGGAGTGCCCATCTCACAGGGAGTACCAGGCCTGTGGCCCTGCAGAAGAGCCCACGTGCAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:38
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(80.8=96.7)
A:
NA
C2:
PF0182612=TIL=PU(35.7=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTTGCCCAGTGCCAC
R:
GATTTGCACGTGGGCTCTTCT
Band lengths:
246-637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)