RnoINT0000856 @ rn6
Intron Retention
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214687333-214687727:+
Coord C1 exon
chr1:214687333-214687511
Coord A exon
chr1:214687512-214687707
Coord C2 exon
chr1:214687708-214687727
Length
196 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
3' ss Seq
TTCTCGTCCCTTCCCTGCAGCTG
3' ss Score
12.2
Exon sequences
Seq C1 exon
CTTATTCTCCCAGTGCCACCCCTTCGTGCCTCCCAAGCACTACTACGAAGCTTGCCTGTTTGATAGCTGCTTTGTGGCTGGCTCTGGTATGGAGTGTGCCAGTGTACAGGCCTATGCTGCCCTCTGTGCTCAGGAAGGTGTCTGCATTGACTGGCGGAATCACACCCAGGGGGCCTGCG
Seq A exon
GTAAGTCCCTCTTATCCTTTCCCATTCACTGCCCTGTGCTGGGGCTTGTGGCCAGGCACGGGTACTGGGCAACTACCCATCCTCTGCTGGCATCGGGTGAAGTCCTGTGTGGGAAGGCTGGGTAGCTCTGTCACTGCAGGGAGGGACAGGCTTCTCTCTGGATATGGCCTTCCTTATTCTCGTCCCTTCCCTGCAG
Seq C2 exon
CTGTGACGTGTCCAGCTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602:ENSRNOT00000075002:54
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(81.1=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTATTCTCCCAGTGCCACCC
R:
GTGAGCTGGACACGTCACAG
Band lengths:
199-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]