DreINT0014881 @ danRer10
Intron Retention
Gene
ENSDARG00000104499 | MUC5B (2 of 3)
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr25:8169468-8169857:+
Coord C1 exon
chr25:8169468-8169652
Coord A exon
chr25:8169653-8169787
Coord C2 exon
chr25:8169788-8169857
Length
135 bp
Sequences
Splice sites
5' ss Seq
GTGGTATAC
5' ss Score
1
3' ss Seq
GTCTTTGGTTTCTTGAACAGATT
3' ss Score
8.99
Exon sequences
Seq C1 exon
TGTGTTTAAAAGCTGCCATGATGTCGTTCCCTTTGTTGAGTATTATCAAGCATGTAAATATGATGTGACCACTATGGGAAATGAGTCTTATGGCTGTGCTAGTGTGGAGTCCTACGCACAACTATGTGGCCGTAAATCTATCTGTGTGGACTGGAGAAGCTCACCTGAACTTAAAGGGCTCTGTG
Seq A exon
GTATACTCACTAACACATTCATGATTGTAGTAATGTTTACTTGTAATGTGTGTATGCATGCATTTGATTTTACTTTCACTGTTGTAATTCATACATTGTGTCTGACTTGAGTCTTGTCTTTGGTTTCTTGAACAG
Seq C2 exon
ATTTCAAGTGTCCTAGTACCAAAGTCTACAAGGCATGTGGACCGAAAGTGGAAAAATCCTGCAGTACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104499:ENSDART00000164115:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(84.9=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGCTGCCATGATGTCGTT
R:
CTGCAGGATTTTTCCACTTTCGG
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]