MmuINT0102354 @ mm10
Intron Retention
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:141748930-141749373:+
Coord C1 exon
chr7:141748930-141749108
Coord A exon
chr7:141749109-141749303
Coord C2 exon
chr7:141749304-141749373
Length
195 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TTCTTGTCCCTCCCCCACAGCTG
3' ss Score
11.37
Exon sequences
Seq C1 exon
CCTATTCTCCCAGTGCCACGCCTTCGTGCCTCCCAAGCACTACTATGAAGCTTGCCTGTTTGATAGCTGCTATGTGCCTGGCTCTAATATGGAGTGTGCCAGTGTACAGGCCTATGCCACCCTCTGTGCCAAGGAAGGTGTCTGCATTGACTGGCGGAACCACACCCAGGGAGTCTGCT
Seq A exon
GTAAGTGCCTCTCATCCTTTCCCACTGACTGCACTGTGCTGGGGCCTGTGGGTCAGGCAAGGGTACTGGGCAGTTACCCATTCTCTGCTGCCATGGGCTGAAGTCCTGAGTGAGAAGGGCTGGGTAGCTCTGTCACTACACGGAGGGATAGGCTTCCTTGATGTGACCTTCCTTATTCTTGTCCCTCCCCCACAG
Seq C2 exon
CTGTGAAGTGCCCACCTCACAAGCAGTATCAGGCCTGTGGCCCTGAAGAAGAACCCACCTGCCAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515:ENSMUST00000187945:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(89.6=100)
A:
NA
C2:
PF087426=C8=PD(6.0=16.7),PF0182612=TIL=PU(36.4=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTCTCCCAGTGCCACGC
R:
CTGGCAGGTGGGTTCTTCTTC
Band lengths:
243-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types