GgaINT0058514 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:16015421-16017725:-
Coord C1 exon
chr5:16017547-16017725
Coord A exon
chr5:16015491-16017546
Coord C2 exon
chr5:16015421-16015490
Length
2056 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TTTTTATTCTCCCATTCCAGCTT
3' ss Score
9.3
Exon sequences
Seq C1 exon
TGTGTTTGAGAAGTGCCGTGAAGTTGTTAAGCCTGATAAGTACTATGCAGCTTGCGTTTTTGATAGTTGTACACTTCCCGACTTAGACCTGGAATGCTCAAGTCTGCAGATCTATGCAGCTATCTGTGCCGATCAAAATGTCTGCGTTGACTGGAGAAGTCATACCAATGGTGTTTGCT
Seq A exon
GTAAGTATTTGGCCATTTATCATGAACTGTTAGGGAGTCTTAAATTGAACTTATATTTCAGCTATCTCAGTTTAAACCACAGAAAGCTGGTTCTAGCAGCAGCATTAAGCTGCTGAAACTTGCAAGGTGCCCATGGGGCATCTGAGGAGCTTTCCAAGCCACTTTCCGCTCTCTGGCTGTGTGTGTGGAGGGGCTGGCTGGCACACACAGCAGATCTAAGGAGAGGGCCAAGTGAGAGTGTGGGAGCGCTGGCTGCCCCAGCTGTCAGTTCACAGGGATCTGCATAGAACCAGCCACTATGGAGCTCCAACAACCAAGGTTTTCCAACAGTGAGTTACATCTTTTGGGATGTTTGTCTTCTTACTGAACTGATCTGCAAATAGGAAATGCATAGGCAGTGGAACTGATGTCATGTGTCCTGGGAAGAATAGAGGGACAGTGCCTAGGTGGAATCAGGAAAGCTAAGGGATAATTATAGCTGAATTTAGCAAAGAATGTGAAAAATGATAAGATGGTCTTCTACAGATACTGCTGGTCAGAAAAGCCTCACTTTTCTCTGGGAATCACCCTTGTCACATATCACAAGTCCCTGAACCTCAAGGTAGTGACTGGGGTATCAAAGTCCTTCCCACTGTGATAGAAGAGCAGGTCTGAGACCATCTGATGAACTGGAACATACACATGTCCATGAGACCTGACAAAGTGTATCCCAAAGGAAGCTGGCTGATGTAGCTGCTAAACCACACTCCATCAGATTTGAAAAGTCATGGTAGTTAGGAAAAGAACCAATGCTAATCAATGATAGAGATAGTGGGAGTGAGTGCACCCTCAGTAAGTTTGCAGGTGATACCAAACTGACTGGAGCAGCTGATATGCCAGAGGAAAGGGATGTCATCCAGATGGACCCTAACTTGCTTGAACTGTGGGCCCATGAAATTCATTGAGGCTAAGTGCAATGTCCTGTACCTGGGTCAGGACAGAATCCCCGGTACCAGTACAGACTAGGTGATGGAATGCTGTACCTGGAGTATTGCATCCAGGCCTGGAGTGCCTTGTGTGTGAAAGACATGAGGGTGGTAATGTGCAGAGGAAGGCTGCAAAAATGATCAGAGGGTTGGAGCACCTCTTTTGTGTAGACAGTGAGAGAACTGGGGTTGTTCAGCCAGGAGAAGAAGGCAGTGGGGAGACCTTATTGCAACCTTTCAATAAATAAAGACAGTGAATAAGAAAGATGGGGAAAGACTTTTTACCAAGGCCGGTAGAAAAAGGACAAGGGACAATAATTTTAAACTGAAAGAGGGTAGCTGTAGAGTGTATATATAAGGAAGAAATGTTTAATGATTAGTATGGTGAGACAGTGGATCAGGCTACCCAGAAAAGTTGTGGTTGCACTATCATTGAAAGTGTTCAAAGCTGGGTTTAACAAGACAGCTTGATCTAGTGAAAAATGTACCTGCCTATGTCAGGGAATTGGACTACATAATCTTAAAGGGACCCTCCAACCCAAACCATTCTATGGTAGTGTTCTAATGATAGATTATGTTTCTTTCTGTGCAATTAAGACATCAATAAATCACACCAATAAATAATTTCTTCAAGTTATTTTCAGGTGTATTTTTAACAATAGAAGTAATGAATGAGCCTGCAAAAATATACATCCATTTACTGCATAAGAAAGACCTGTATAAGTAGATATGTCTCTTTTTTTTCACAGTCAACTATGTATTTTGCAGGTATTGGCAGATGACTCATTTACTTAGTGTAAACAAGAGAATGGGAGGGTAGGAAAACATTCCCCTTTAAGAACTTATACAAAGGAGACCTAAATTACAAAAAAATTGTAATCAAGATATAGTTTCCTGGCTTTATCTCCTTAAATGTAAACAATGGTGCTATGTAGCAAAATTGCATGAGTATGATACCTCTTTGCTTCTCAAGATTGTCAAGCATGCATAGGAAAATAGGTACTTAATATTTAATTTCTTGCCATAAGGTCATGAGAACTTTGTATGATAATCTTACTGAGCTCTTCCTCTTTTTTATTCTCCCATTCCAG
Seq C2 exon
CTTATGAATGTCCCAAACATAAAGAATATAGAGCATGTGGTCCTATTCAAGAGACAACCTGCAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(81.1=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(35.7=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]