DreINT0099058 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8311245-8311861:+
Coord C1 exon
chr25:8311245-8311429
Coord A exon
chr25:8311430-8311791
Coord C2 exon
chr25:8311792-8311861
Length
362 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
ACTGTTGGTTTCTCTAACAGCAC
3' ss Score
9.09
Exon sequences
Seq C1 exon
CATGTTTAAGGAGTGCCATGATCATATTCCTTACGAAAGTTATTATGAGTCATGCAAATTTGATGTGTGCCGCATGGGAAATCGTTCAATTGGTTGCACCAGTCTTGAGGCGTATGCTGCATTATGTGGAAAAGAAGGCATCTGTGTGGATTGGAGAACCTCCGATGACCTTAAACAAACCTGTG
Seq A exon
GTAAGCAGAATTAACACATTCTAAACAAAAATGCTGGGTTAGCACTGTAGCACAAAAAAGTTACTTTGTATAACTAGCGCTTCTTGTGTGTATTGCCTCTTCTTGTTGAATCACTGAATACCTCCTAAATTGTAAGTCGCTTTGGACAAAAGCTTCGGTTAAATGACTAAATGTAAATGCAAATGTAAAACATGGGTTAAAAAAAGTGCAATTTTAACCCAACATTGGGTTTTTCCATATTTGACTAAACAATGGGTTACAACAATACAGAATTTTCTACAGTGTATCTTTAACCTTTTAAGACTGGGCTTTACATCTCGGAATGTTTAAAAATATGTAATCACTGTTGGTTTCTCTAACAG
Seq C2 exon
CACACAAATGCCCCAGTCACAAAGTATACAATGCATGTGGACCTAAAGTGGAAAAAACCTGCAGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(83.8=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTTTAAGGAGTGCCATGATCA
R:
TTCCACTTTAGGTCCACATGCA
Band lengths:
238-600
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]