Special

RnoINT0000899 @ rn6

Intron Retention

Gene
ENSRNOG00000058420 | AABR07006033.1
Description
NA
Coordinates
chr1:214751207-214751987:+
Coord C1 exon
chr1:214751207-214751385
Coord A exon
chr1:214751386-214751896
Coord C2 exon
chr1:214751897-214751987
Length
511 bp
Sequences
Splice sites
5' ss Seq
GTCGTGAGT
5' ss Score
7.82
3' ss Seq
GTGACTCTCTCTCCATGCAGCAT
3' ss Score
10.3
Exon sequences
Seq C1 exon
CGTCTTCAAGCTCTGCCATGACATCATCCCCCCGCTGCAGTTCTATGAAGGCTGCTTATTTGACTACTGCCACATGTTGGACTTGGAGGTGGTGTGCTCAGGCCTGGAGCTCTATGCATCACTATGTGCAGCCCAAGGCGTGTGCATCCCCTGGAGAAGCCATACCAACAACACCTGTC
Seq A exon
GTGAGTGCCCAGCCAAGTCACCTTTCTATCCTCTGTTGTGAGCATTTAGGAGCACTAGGCAGATAGCCTGGGTAAGGAGAAGGACATCCAGACTCAGGACCAGTCTTCCCTGGAGGGAAGTCTACAAGCACTGGGTTTATTGTGAGAAAGGGGGTTTGTCAAGTTAAGGTGTCTTTGGATTTAGGGCTTGGGGTGCTGCCTGTCTTGGACAAACAATAGAGCTAAGGACCTAGACAAGCAGTTCTCAACCTGTGGGTCAAGGGGTCCCATATCAGATATCCTGTACATCAGATATTTACATTAGATCCAAAGGAGTAGCAGAAGTTCAGTTATGAGGTAGCAGTGGAATAATTTTATGGTTGTGGGGTCACCGCAACATGAGGGACTGTATTAAAGGGCCACATCAATGACTTCTAAGTGGGTGTCAGCACTCAGCAATGGCTGGGGCTTGGAGGAACCCAGAAGTGGGGCCTTGAGACAGCTTCTCAGGTGTGACTCTCTCTCCATGCAG
Seq C2 exon
CATTCACGTGCCCTGAAAACCAAGTATACCAGCCTTGTGGTCCTTCCAACCCTCACTACTGCTACAGGAATGATGATATCAGCCTAAGCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058420:ENSRNOT00000091110:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF087426=C8=FE(81.1=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
([1])
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTCAAGCTCTGCCATGA
R:
GGCTGATATCATCATTCCTGTAGCA
Band lengths:
263-774
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]