GgaINT1001056 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14364369-14367336:-
Coord C1 exon
chr5:14367071-14367336
Coord A exon
chr5:14364484-14367070
Coord C2 exon
chr5:14364369-14364483
Length
2587 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
AAGTCTGACTTTCTTCCTAGTGT
3' ss Score
5.91
Exon sequences
Seq C1 exon
GGAAGGACAAGAAACCATGGCCACTATGTCTGCAGCACCTGGGGGAACAACCATTTCAAAACTTTCGATGGAGATATCTATCAATTTCCTGGCATGTGCGAGTATAATTTTGTTTCTGACTGCCAAGACTCTTACAGGGAGTTCTCTGTCCACATTCAACGTGCTCTGAACAGCAATAACCACCCTGAGATCCAGTATATCCTGATAACAGTCACGGATTTCACAGTGTACCTCAAGCCCAAACTGGCTGTTGTGGATGGGCGGAT
Seq A exon
GTAAGTACATTTAGTGTGGTGGTGCTGGGAAGATAAAAACAGGATTGATTCTTTACACATCCGTCTGTATACCATATAGCATAGTGGCTAAAAGCATTTCTACTAAAAAAACCAACCAAACAAAAGAAAAACAAATAAAAAACATTAGAAATCCAGCATAAAAACGGCTTTAGGAAAGGGCTTTACTGTTCATGGGCATAAGGGATGATTTAAATTCCAAATGGGAAAAACCTTTAGTGAATTTTCTTTTTCTAATTGTGCAGGAAACAAAATGCAGCTCATGAGGCAGATCTTTCACTGTTGTGAAATGATGTAGCCATTAGTTTTATGGTATCATCTTGTGTTTATGTTAGCAGATGGTCTGTCTAGCAAATCCTCAGAAGTAAAACTGTTTCTGTGCAATCTTCTCTTATTTTCCAGGAAGTAGACGTGTATTTTTTTCTGATATTCATAAGAATTTCCTTAAAGTCCAGTAACCTTTCCTCTTGCAATTATGGTAGATAGAGTGTAGATCAAAAAAGGGATTTTTATGTGGCAATGTGTATCATGAAAAAGCTTTTCCAATAATATGGTCACACAAGGAATTAGCCTGACACCATTATTCATGTCAAGTTGTGTCTTAACCTAACCTTTCAGTGTGTGTGTATATATATATATATACGTAGACTGAAAGAAGTGAAGCAACTCATGGGTTAAGATGTAGTTCTGCAGGACAAAAGTGAAAGAAAATGGATGTTAGTATATCTTAGAGTAATTAAAAAGAAAAATCTATTTTCAGGGTATGATCAGATTTTGTCTTGACCTTAGCTTTTGATCTGAAGTGTGAAATACACTGCAATGAAAAACTACTCAGATTTAAACAATAACATTCAGTTTTCCAGGAATCATACCAGAGTACATAAGAAAATGACATGAAGCTCTACAGAATGCATTCTTGTCCCAGATTAAAAAAGCCCCTCATCATGTACTCAGATCATAAAAAGGGCTCCATGAAAAATGTTTAGAAATCCTTTCTTGAATCAGACCTCTTTTTATCTTAAGTATTGTTCATAACACAGTAGATCCTTTGTGAACAGAGACTTGTAGAACAGGTTTTTGCTGCATGCAGGATATAATTTTTGTAGAACTTGATTTCCAAATTGCTCTTTAAATGGTGTATGATCCGTTGCTATATAAAAAATAGTATTTCACACCACTGAAGTGAAATCTGTAAAGCAGATAAATTTATGAATTTGGCTTTTGGTACCTGATGCACTGGTTAATGGAATGTCCTAGTATTGGAATAAAGAGAGATATCTCAGTCTGCAATATCTGAGGTGAAAAATTGCCCAATGTTTTATAATACCTCTCTAAAACCACAATCTATTAAGGCCTCATTGTGAAGGATGGACAATGCAGTCAACAGTAGAAATAATAGCCTCTGAGTTCCTGCCTAGTATTTATATGCCTAAACCATTTGGCCAAGTGAAAAACACCTGAGGTAAATAGTTGGAAGTATCCCAGTTATAGGTAATAAGGAGCTAAAATTCTCCCAGTCACAGCTACATAGAGATGTGCACAGATATATGAATCCTGGTAGACAATAGTTGTACTGGCAAATGGGTAGAAAATATGTTGATTATTTTGTCTGGATTCCAGTGTGCAATATTTTTGTTTGAACAGACTCCAGCCCTTTAGATTTTATAGGTTAAGGCTGCTTGCCACACTGCCTTTATTGCTGAATGAATTTCAGTGGTGTGACTTGTGACATAGTGTACTGTAAAACAGATATACAAGTATAGGAGTGATGTCTCATGAATTGATTCCCTATCAAACAAAAGCATCTATACTCGGCCCTCTACAAAATATCTTCTGTCATGTTAACATGCCTTACTGTCACTATTAATAAGCTTACTCCTGCCACCTGAAACAAACTACTGAATTCCTCTTAACCTGCCCCCTTCTGTTCACATTTTCCTACCACTTTTGTTAGCCTCTGCTTTTTGAATTCTCTCCTGAAGAGGAAGATCTTTTTTAAAGGAACATTCACTCTCTCTGGAATGATTGCAGAGTTTTTAATATAGAAAACTTTGATTTAGACTGTTACTTCTTTGGTAAAAGTAAATGATTAATGAGCCTTTGAATATCCTCTACTAATGCCAAAATGATGATGGATTTTGCTTTAATTAAGTTAAAGAGATCTGGTTCTTTTTTTTTTTTTTCTTAAAGAATCTGTGCTCTCAAGGAGCCTTTTACCTCTGATGCTGCTTTATGATTTAAAGACAGTAAGTTACCTTGTCGAAGATCAGAGAAAGAGGATTATATGTTTCACTAAAATGATTCATCCTGTGCAGATAGCATCAGAATGGAATAATTTAGTTGGAAGGGACCCACAGACATAGTTTAGTCTAACGGCCTGAATACTTCAGGGGTAATCAAAAATTAAAGTATATTATTAAGGGTATTGTCCTCATGCCTCTTGAACAATGACAGGCATAGGACCTGAGACAGGCTGGTTTTTCCATTCATTAGGGTATTTGGCATATAATAGACATTCATGTTGCTCTTTATATTTCTGTACTAATGTAAAGTCTGACTTTCTTCCTAG
Seq C2 exon
TGTCAAGACACCCTACTACAGCTCTGGTTTGCTCATTGAGAGCAATGACATTTATACCAAGGTTTATGCTAAACTAGGCCTAATTCTGATATGGAATCAGGAAGATGCACTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(53.8=87.6)
A:
NA
C2:
PF0009420=VWD=FE(26.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]