HsaINT1023895 @ hg38
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7512]
Coordinates
chr11:1075651-1077568:+
Coord C1 exon
chr11:1075651-1075921
Coord A exon
chr11:1075922-1077453
Coord C2 exon
chr11:1077454-1077568
Length
1532 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
CCCCGATGTGCCTCCGCCAGGGT
3' ss Score
5.9
Exon sequences
Seq C1 exon
AGGGCAGAACCCGAAACCACGGCCACAACGTCTGCAGCACCTGGGGCAACTTCCACTACAAGACCTTCGACGGGGACGTCTTCCGCTTCCCCGGCCCCTGCGACTACAACTTCGCCTCCGACTGCCGAGGCTCCTACAAGGAATTTGCTGTGCACCTGAAGCGGGGTCCGGGCCAGGCTGAGGCCCCCGCCGGGGTGGAGTCCATCCTGCTGACCATCAAGGATGACACCATCTACCTCACCCGCCACCTGGCTGTGCTTAACGGGGCCGT
Seq A exon
GTGAGTGTGGTCGGTGGCACCCCTCCCACATCCTAGCAACGGGGGCTGATGTTTCCCAAAGGGATATTCCTTGTAGCCCTAGAAGACCCCTTCCGCCCCAGCACACAGCTCAGGAGAACAGCCTTGAGGTTTGGGTTCAGGTCACTAATTCATTCAACAAACACTGATGAGCCCCCACCATTCCCCCCATAGGCAAGGGGTTTCAGTTATCCCTTTGCCTGTGTGTCCCTGACAGCCCCTCCCCTCGGAGCCCACCAGGCTCCGGACAGACTTGGCACCCCTGGAGGCTGCATGTCTCTGGTCCTGTGCATGGAGTGGCCGTGTGTGCCCTCCCCAGGCTAGAGTTACAGAAGCCGGTGCAGGGGGCTGTGGGACCCCCTTCCCCATCCCCAGCTATTGCTCCCCTATTGTCTCCAGAACAATGAGGCCCTGTAAGTGCGTTCCCATCCAGCGCCTGCCCCTCTTCTGCCTGGGGATTTAGTTTCCTGCAAGGCGCCCCAGCATGGGCATGGGCAGGCGGGTGGAGGCCCTCAGGCATGGGCATGGGCAGGCGGGTGGGTAGAGGCCCTCAGGCGTGAGTGCGGGCGGGTGGGTGGATAGAAGCCGTCAGGCATGGGTGCAGGCGGGTGGGTAGAGGTCCTCAGGTGTGGGCATGGGCAGGTGGGTGGGTAGAGGCCGTCAGGTGTGGGCGCGGGTGGGTGGGTAGAGGCCCTCAGGCATGGGTGCAGGCGGGTGGGTGGGTAGAGGCCCTCAGGCGTGGGCGCGGGTGGGTGGATAGAGGCCGTCAGGCGTAGGTGCGGGCGGGTGGGTAGAGGTCCTCAGGTGTGGGCGCAGGTGGGTGGGTGGGTAGAGGCCCTCAGGCATGGCACAGGTGGGTGGGTAGAGGCCCTCAGGCATGGGCGCAGGCGGGTGGGTGGGTAGGGGCCCTCAGGCATGGGTGTTGGCAGGTGGGTGGGTAGAGGCTTTCAGGCATGGGCAGGCAGGTAGAGGCCCTTGAGGACCGAGGCACAGAGGCTGGGGTGAGTGCCTCTACCTGGACCAGCAAGGGGCACTGGCAGGAGGTGGGGTAGGGCCCCTGACGTTCTCAGGGGCAGCCTGGGGGGCTCTGGGGGGTTTGGGACCCCATGGGGGGATGTTCCACCAAGCAGGGGGCCTGGAAGGGGGCTGGGCAGCCTGGTCCTCCCTCCTCTCCCAACCTGGTGCCCTCAGGGCCTCTGAGGGGGGACCCTGCCCAGGACCGTGCCCCGAGGAGGGAGTGGAGAGGAGGGGCGTGCAGGCAGGAGGTGGCTCTGCCGGGGAAGCCCGGCCAGCGGAGATGGACAGGTGCTCTTTGGCCACTGCCTATGTCCCTCCACCCCAGAGGCCGGCCAAGTTGGTGATCCCAGGGCAGGAGCTGGGCCTGGCAGAGCCATCTCCACCACCCCAGGTGCCCAGCTTCAGTCCCCTCTGGGCGGCGGGGTCCCGGGAGGACAAGCTGGGGCGGGGGGGCCTGGGTGGTGGACCCAAGAGTGACCCCGATGTGCCTCCGCCAG
Seq C2 exon
GGTCAGCACCCCGCACTACAGCCCCGGGCTGCTCATTGAGAAGAGCGATGCCTACACCAAAGTCTACTCCCGCGCCGGCCTCACCCTCATGTGGAACCGGGAGGATGCACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788:ENST00000361558:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGCAACTTCCACTACAAG
R:
ATGAGTGCATCCTCCCGGTTC
Band lengths:
344-1876
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains