GgaINT1001103 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NDV6]
Coordinates
chr5:15421069-15427270:-
Coord C1 exon
chr5:15427190-15427270
Coord A exon
chr5:15421177-15427189
Coord C2 exon
chr5:15421069-15421176
Length
6013 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTGCCTTTTCCTCCTGGCAGATG
3' ss Score
11.81
Exon sequences
Seq C1 exon
CAAAAGCAGCAGGAAATTGAGCGCGTGGACAAGTGGCTGAAGATGCTGAAGAAATGGGGCAAATACAGAAACAGTGACAAG
Seq A exon
GTAAGGTGGAAAGAAAGAGCATATGCAAGAAGGGATGCTCTGGTGACTCCTTCGAATAAGTCAGGCTTTCAGAGAAAGTTAAGAGAGAAACCAGAGATAGATGGAAAATACCGACTAATTCTACCCGTTAGTTAGTCTTCAGTATTTTAAACCTTTCCTTAAATTCACTGGCTTACTAGTGAAGGGAAAATTCTGTTCTGACTCAAATATGATGAGAAATCCTAATTGCTGCCTACATGTTTTCACTGACACCTGTGCAAGCAGGAGCACAGCAGACATGTTTGTGTGCCCAGCTGGGTTCCTGCTGCACACTGCAGGTTACTTGTGTCTGCAGCACCTGGGCATGGCATGGATGATGCAGTGGGTACAGCTGATGTTCCTCCTGGTTTTCTCACTGGAAGACTCCCAGGGGAGAGACACATCAGTCTAGGACGTGACCTAGATTTAGGGTTTTGCTCCCCGCTTTGCCCGTGTGAAGCCCTTTGGCTGTTTGCTGAGCCTATTGGATGGTGTTCACCCATCTGTGGAAGACACGTGTGGAGGCATTAACCTTTTGCATTGGATTTGACATCGTAAGTAAACGGCACCAAATGCCAGTGCAAAACCAAATTCATTTTAATGAATAATATTTGTAATAAATTCCTAGGACAAACATCTTAAAGCAAAAAAAAGCCTCAAACCTGATGGCAGGCTTCAGACCCTTGCTGAGCACAGTCAGAGGCACTGTGCCTGACCTGCCTGCATTTAGAAGCTCCATGTGTTGGCTCCCTCAGAGCTTTCTCCAGAAGATGCCAGCACAGCCGCTAGAGACTGCAATGGGCAGCTTGGAAACAGAGCATCTCTTGCCTGATCACTGGCAGTCTGGAGCAATTTGAAGTTCACCCAACCAGAGAACACCAGTAGGCTCCTTTTCTGTTAAATAAAATCTTATTTTTGTTATAACAAGAATGGGACTGAAGATAAGCTTGGGATGTTTTAGTCCCTCTTCTCGTTTCAGTGCTGTTATAATTATTTTCTTCGTCACTGCTATTCTGTGGGTGGCAAAAATGGAGGCTCTCCTGTGGCCTTGACTTCTCTAATTAGAACTTAGCATTAATTGTTCTGTGGCCTTGTGGATACAATACCAAATTCCATCAGTGTTCAGGGAATCCCAGCAGGCCCAGTCGTGTTTGGAGTGTGCTGAGCACACATTGGCTCTCCTCTGTCAGCTCAGGTGGGCCAGCAAGAAGTTCAGGTGCTGGAAGAGTACAGGACAAACCAACTGCCTTGGTCCTTTGTCCAAGTGATGGAATTCCCATGTCCAGCCCCAGGGTTGATCCCAGGAAGCACCAAGGAGCAGGATTTGTATGACCTGGCTGCTTGCTGGCTTTCAGCTGAAGGCTGGAGAGGTGCTTGACCGGCCATCCAACAGCAAGCCACTCACAGGTCCCTGTGTCAGAGGGTGTAAAGGAATAAATGACGTTGTTATTTATAACAGCCCGTGAACGGTCCCTCACTCCAGGACACAGAAGTGGCATTGTCCCCTGTAGGACTTGAGCCCTGGCACTCAGCATCAGCCCCCCCCAGCGGCTTAGGCACAGCGCTTGGCGGCAGCCTGGGAGAGAGCGTGAAGCCAAAGAGCACAAAGCAGCTTTGAGTCAGGCCTGGCAGCCTGCTGGCACTGCTGGCAGGAAGCTCTGTGCTGCTGCCGTTACCATCGGTGCATGTATCAGAGCTACCCTGTGGAGCTCAGTGTGGAGCAGCAAGGAGCAAGACCTCGGGAAGCATGGAGAAGTACCTTCACCTGGATGTGTTTTCCATCCCTGTCAGTCCCTTGCATGGAACACACCACCATCTGCATTGCTGTTTTGAAGGAAAGATGCTGCACTCTTAGGGCTGTACAGCCCATGCTTCATTGGGAGCACAGAAGCTGCCTGGAGGTTGGTGTTGTCATGAGCTGATGGCTGACACAGCTCAGGGGTGGAATTTAAAGGATTGCAAAGAAAGGATTCAGATTTCCTCTTAAGAAGAAATCTCTTACTGAAGACAGGAGCCATCTCTTTGTCCTTGCTTTTGACACAGTCTGTTCAGAAGGACTCTGGACTCACTGTGCTGTCGTGTGTGTTTTTCAGCGTCAGCATGGGGCTTCGGTTGTTGCCTTGGCTTGTCTGTTTTGGAATGGGCATCTCACGCCTTTCCCAGCTCCAGAATCAAATCAGCACAGGCTCCTGCAGTGTGCAACGAGTAGTACTGAAAGCTACCAAAGCTGCACTAAGAACACCCACAGGGGCTTTCTGCTGGAAAGGAGAAGGGCCGTGGTGTAACCATCTGTGCCACCTCTGAGGAACACTGCACCCTCCCTGGGGATGCTCCCTGTCTCCAAGCCTGGTTGACATTAGCTCAGTTTCTAGCATGCATTCCCACCTGCTACTGGCCCCTGTCTATGTGATGTGGCTGCTGCTCTGTAAGAAACAGAGAGCCCTCAGCAGGCAGCCTCTGACATCCCCCTAGCCCAAGGTGGCCCGCCTACACCCCAAATCACTCCTGGTATGACCTGTTTCAAGATGAGCAGCAGATAGGATTGCCTTAATGAAAGCAGTGCCCTGGGGTTCCTCATGCTCAGGGCCACGTCAGCTCTGTCTGCAGGGCTGTTCTAGGCATGCTTTGCAGCACTGTGACTTAATTCCAGCGGAAGCACACAAATGACAGCAGTGCCATTGAGCAAGGATGTGGTTAGGCTGATGTCACAGTGCTTGTTCCTGGCCATACATGTAACCTTACTGACTTCACAGGAAAAATGATATGGTAATAAATGAGTCCATGCTAAGGGCACACAGCTCCACAGAGCCAACACGTGCCAACTTGCAGAGAAGTGTGGTGTTGTGTGGCTCAGGATGCAGCACAGCAGGGCTGGGGGATTTGTGCTCTCTTCACTGCTGTTCTAAACCCATGTTATTACTTTTAGGATTCTAGGAAATGTCCCGATGGTGCCATGTAAGCATATACAAAATGCTACACTGCCTGCTTCTTGATAGCAGGCTAATTTCTTCATTGTAGCTTTGGAATAACTGGATTTTGACCAGAAGCATCAGTCCTGTGGGACTGAGAGCTGGGGATAGGATGTGATCTGTGTGCAGCGTGCACACTGATTGTTGCATTAGGACTTCGGAGAGGGATGTCTTTGGCTGGGGATGTCAGGTTCTTAGCAAAGCCTGTCTTTGCACACAGGCATGGCCTTGTCTCTGTTAAAGGTCACTGAGGTGCTGGGTTCTTAATCTGATGCGTGCCGACAAAGCGGTTTAGGATGAATCAGGGCTCTGTGTTGACTGGCACAGACCCCCAGCAGGGAGTAATCTGCTCCTGCTAGGGACAGCCTGTGGACCTTTGTCACGGCAGGGTTGGGCCGAGTCAGGCAGGCCTGCTGTACTGCTGCCAGCAAAGGAAGGGGTTGCACTGTTGTAGCAAATGGTCTCTGCCACAGCCACCACATTGTCCTCGTGTTGTGCCACCAGGGCAGTGGAGATCCCCCCCCGCCCCGACACTGGGGTCCACCCCTCTGGTGAAAGCCGTGGAGCCATCACTTCAGCTCCCAGCACCTCCACTTGTGAAATGGGATGGGGTTTGCTCTCCCTGCCCTCTTTGTCTGTGGCAGGCTGCCTGGGCTGTGGTCCTGGTGCTCTTTTCACAGCTGCAAGCACTGAGCAGTTTATTAGAGCCAAAAGTTGCTGATTTGGGAGGGTTCTTCATTTTCACAAAGAGCAGCAGCTGCTGTCACCTGCATTCCCCTTCCCACATAATTGCTGCTGTTAATGATAACTTCCCTGTTTTCCTTCAAGTCTCACGACAAAGGAAAATTGCTCATTTTCCCTCTCCGTGATTCACAGCACTGAGGTTTTATCACTTGCACTTCTGGAAGTGGTGGGAGGAGGAAAGCCTTTGGATAAATAGCACGAAGGCATTTTAGTTCGTTTCCATCTCAGCATGTTTTGTAACTCCCTTGTTTCTGTTGCACTCTTGTGCGGAGAAAATCATTAGAGACATTTACTATATATGCCACACTTGTTAAAGTATAACAATAACAGCTCTGAGAATTCAAAACAAGATGATTTTCTTCCCACAAAGCTGAGCTTCTTGCTCTACCTTGGTGACTGTCAGCCGCTCTCTCCTACTACTCTGGAAACAAACAAATCGTGGGATGATTGTTAACTAAATGGGTACGTGCTCCATGTTCTTCTTCCTGTCTCAGCTTGTGCTTCACGAAGTTGTGAGCCAGGCTCTCGTGGGCTCCTTGTTGCCCAGAAAGGTGGTGGATGCACTGTCCTTGGAGACATTCAGGGTCAGGCTGAATGGGGCTCTGAATGCTCTGTCTAGTGTAGATATCCCTGTTTGTTGCAGGGGAATTGGACTAGAAGGCCTTTAAAGGTCCCTTCTAGTTCCAGTGATTCTATGATGTTCCTTTCCAGTTTGACTTTGGTTGAGTGGTTCATGTAATTGCATTGTTCCACGTACACATTGTGCTTCTTCCATGCTGATTTTGGTAGACCCTGAAGTAGTGACGTACCCTAAAACACAGGCCATCATTGGGCAGGTAGGAGGCCTCCCTCTGTGCACATCTTGGTGGTGAGCTGCTGCCTCCTGGGCAGCTCTCTCCTGGTGTTAGCTGAGGGTCTCACAGAGGGCTTCTGTAGGGTGTGGTGGTTTGGGGTGTGCATAGGACCTTCACAGCAAGTGAGACTGCCTGGAGCAGTGAGCAGCAGATCTGGGGCAGGGCCTGTGCTAAAAACTCAGGTGAGAAGAGAGGAAGCTGATGGTGTGGGATGTGCCAGGAAGGAGAGGTGACAGCAGCAGGTGTTCTGCTTAGCGCCAGGGATGCAAAGGCAACATTGCAGGTCCGTGATGAGAAAACCGCCTGCCGATACTGTGTGGTTTGATATTTCCCCTCGAGATACAGCTCTTGCACCGAGCTTATGGAAAGAGAAGAGGGATTTGTGGGGAGGTCAGATAAGTTTAAGCCAGACAGCATGAACGGATTGTGCTCAGTGGGGTATGGAGCTACTGCTCTGCCCTGTCCTATGGGGTCCTTCAGTCCCTGCATCCTAACGTAAGCCCCCTGCAGCTGCAACCTGGGCCTGTGCAGCCCTGGGGTCCCCTGGAACCTGGAGGAATGCTGCAGTTGGTTCTGTAGTGCAGCTGCAGGACGTTTCAAGGGGGTGGAATGAGTGCGAGCATGGAAAATATTCAGGCGTAAGGCACTTTTTTTTTTTTTTTTTTTTTAAGTTCTTTTAATGGGAGAAGTCAGGGATGGAACAAAAAGCTCTTTTTTTCTGTTTCCCATTGAAATTTAATGGTCTGTTCGGAGAGAGAGGGCCTTATGACAAGAAAAAGGAAAGAGGCATCTGTGAGAGGCATAAAGCGAACACATGGATTTAGAAGGGGGGACACACACACATTTGTTTGATCCCTGTCCTTGCTTGAGGGATACGTGTGGGCTGTTACCTCCTCCAGCACAAGTGCCCTTGCTTGTAGCCTGCCTCTTGCCTTGCCACATCTGTCTGCCTTCAGCTGTTGCTGTGGATGCATCTCTGTGATTCTTGTGGTGAGGGCTCTCCTCTCCAAGGGGAAATGTGTTTGTCTCCTCGTCCCTGAGGAGCCAGGTAAGAGTGGCCACACCAGCTCAGACCAAAGGCTTGCAAAGCCAAGGGTACTGCTTCTGTCCCCAAGGGATATCAAGAGAGGAGTCCAAGGACAGGTTGGCTAGGAGAAGTGTAAGAGCTGTGAAGCACCTGGGGTGCATCCACCTGCAACGGGGATGGTCTGTGTCCAGCTCTTCTAGTGAGCTCAAAAGCATGAGGTGTGTCTGGATTTTGGCTGAGTAGTCTTTGATGGCTGCAGATGCCCAGCCCACCCATCAGCCTGGAAACGCCTCTCTGTACAGGGACAGACAAGGGGTCCAGTAGCTGAGGGCTGCTGTTGTGCTATGTGAGCACAGCCGTGCTGCGGCACACTAACGGTGCGTGCCTTTTCCTCCTGGCAG
Seq C2 exon
ATGTGTCGGCGAGTGTACAAAGGCATTCCGCTCCAGGTGCGAGGCCAGGTCTGGTCACTCCTGCTGGACGTTGAGAAGATGAAGAAGGAGAATGAAGGAAAGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006897:ENSGALT00000020386:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(11.9=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]