GgaINT1001143 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NB86]
Coordinates
chr9:12638710-12639879:-
Coord C1 exon
chr9:12639611-12639879
Coord A exon
chr9:12638919-12639610
Coord C2 exon
chr9:12638710-12638918
Length
692 bp
Sequences
Splice sites
5' ss Seq
GTCGTAAGT
5' ss Score
9.9
3' ss Seq
TATTCTCTTCACCCACACAGCAT
3' ss Score
5.55
Exon sequences
Seq C1 exon
TTGTTTGTCAGACTCAAGAGAAGATGATGTTCCTCCTTGCACTGATGAGAATAAACCAATCATTGAAAGTCAGTGCAACGTCCTAAAATCAGACAAATTCAAAGCATGTCATGATCTGGTGAATCCCGAAGACTTCATAAAGATCTGCACCTATGACATGTGTCGATATGATGGCATGAAGTCTGCCCTCTGTGACATAGTTCAGTTCTATGTGGACACCTGCAGGAATCAAGGCATCACCATCACGTGGAGGAATAGCACATTTTGTC
Seq A exon
GTAAGTGCAAAAGAAAGTGAAAAAAAACAGAAAATTGGATGGCTGACAGCATAAGACAGATGAGCAGTATTAGGTAGACAAGTTATATAAAAGATAATTAAGACAAAATATTCAAAATAAACAATTCTGTTGTTATGATTTTATGACTTGACTATGTTGCTGAACTGTTTGCAAGCTGAACTAAACCCAGTGATAACAACTAGATGAGTTGTGGGTGATAGTGTGGAGCTAGAATGGTTTTGGTAGCCAAATGAATGTCTTGAGATACTGCAGTGAGTCTAAAATGGAGAAATAATAGAATCACAGCATCATTTATGTTGGAATAGATCTTCAAGATCATCAAGTCCAACTATAATAACCGTAGTATAACCAGAAGTAAAAAACCAAATGGGAAACTGAACTGAACACAGGGATCAAAGCCACTTGCTGACAATTCAGACAGTTGCTTATTAGGGGCCAAGTTCTTGGATTAATTTCCATTGTATGTGCCACACTCCATCCATTCAACAAAGCTACCATCTAATTATGAAAAAAAGAAAGAAAAGAAGAAAAAGTTTTTGTTTGATGATCAAAATGATCTATAAGAAGGCAGAACTACACCACTATTTTACAGGCCAAGTTGAAGATATCAGGCAAGAACATTTGTTTTAACGTGTTTAATAACACTACTTCTATTCTCTTCACCCACACAG
Seq C2 exon
CATTGCCCTGTCCATCCCACAGCCATTACACAGCCTGTGCCTCTGCCTGCCCATCAACATGCAATGACATTTTTGCCTCATCCCTTTGTGAGAAGACAGAATCATGCACAGAGGGCTGTGAGTGTGATGATAATTATGTGCTCAGTAATGACAAGTGTGTTCCTCTCAGCAACTGTGGCTGCAGGGATGATGACAACAATTACTACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208:ENSGALT00000011664:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=WD(100=78.0)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.9=14.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCTCCTTGCACTGATGA
R:
GCCCTCTGTGCATGATTCTGT
Band lengths:
358-1050
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]