RnoINT0004114 @ rn6
Intron Retention
Gene
ENSRNOG00000058123 | AABR07035780.2
Description
NA
Coordinates
chr12:22366554-22367354:+
Coord C1 exon
chr12:22366554-22366729
Coord A exon
chr12:22366730-22367139
Coord C2 exon
chr12:22367140-22367354
Length
410 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
3' ss Seq
TCTCTCTTCCCCTCCATCAGTAC
3' ss Score
6.96
Exon sequences
Seq C1 exon
CTAGGACCTCTCTGTCCTCACTTTCTTTTGCTTCCCATGGCTTCTGCAGGCAGGCAAGACCTGGATCTCCAGTGACTGCACCCAGAGCTGTGCCTGCGTGGGAGGGACTGTCCAGTGTCACAACTTCACCTGCCCCCCAGGGACTCAGTGCCAGAACAGTGTCTGTTCCAAAATCA
Seq A exon
GTAAGAGGGCAGTGGGGGAAGTGGGAAGTGTGTGCTTATGACTGAAGGGGTCCACAGGGCAAGAAAGAGCTTAGTCCCCTGGCCTTGGACGTTGACAATAAATACCACAATACAGAGAAATTTGGGGGGCCCTCTCTGGACTGCACCCCTTTTCAGTATCACTCTCTCAATGGCTAGGCTCCCACATAGACTTGGAAGATGCATTCTTTTATTCTCTGTTTAAGGCTGGTACCCAGCCCATGCCCAGCGAATTATTGCTGAATGACTAACAGAAGGAAAGATAAAAGGAAAAGAAAATGGAAACACAAGTTGTGTTGGTCATTCATCCCAGTTTGGTTTCCGCAGCCTCTGTGACTTTTGGGCCGCTCTGTCGCTCTCTGCTGACACTACTCTCTCTTCCCCTCCATCAG
Seq C2 exon
TACAGTGCCCAGTCCACAGCCATTACACCGCCTGCCTCCCCTCCTGTCCACCATCCTGCTTTGACCCAGAAGGCCTCTGTTGGGGCACCAGTCCAAGAACCCCCTCCACCTGCAAGGAGGGTTGTGTCTGCCAACCTGGCTATGTGCTGAACGAAGACAAGTGTGTGCTCAGGAGTCACTGTGTCTGCAAGAATAACCAGGGTGTCCTCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058123:ENSRNOT00000082092:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTTGCTTCCCATGGCTTCT
R:
TGCAGACACAGTGACTCCTGA
Band lengths:
342-752
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]